Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3DWK entry

There are 4 chains in PDB entry 3DWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 71	HIS 692
B	ASP 71	HIS 692
C	GLN 70	HIS 692
D	ILE 73	HIS 692

There are122 helices in PDB entry 3DWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	98	102	Right-handed 310
Helix 2	2	A	103	115	Right-handed alpha
Helix 3	3	A	125	130	Right-handed alpha
Helix 4	4	A	148	159	Right-handed alpha
Helix 5	5	A	166	182	Right-handed alpha
Helix 6	6	A	183	195	Right-handed alpha
Helix 7	7	A	203	212	Right-handed alpha
Helix 8	8	A	220	230	Right-handed alpha
Helix 9	9	A	233	238	Right-handed alpha
Helix 10	10	A	242	260	Right-handed alpha
Helix 11	11	A	264	272	Right-handed alpha
Helix 12	12	A	276	280	Right-handed 310
Helix 13	13	A	296	298	Right-handed 310
Helix 14	14	A	299	311	Right-handed alpha
Helix 15	15	A	312	317	Right-handed 310
Helix 16	16	A	320	325	Right-handed alpha
Helix 17	17	A	336	350	Right-handed alpha
Helix 18	18	A	397	399	Right-handed 310
Helix 19	19	A	400	405	Right-handed alpha
Helix 20	20	A	405	413	Right-handed alpha
Helix 21	21	A	447	453	Right-handed alpha
Helix 22	22	A	455	470	Right-handed alpha
Helix 23	23	A	473	482	Right-handed alpha
Helix 24	24	A	491	496	Right-handed alpha
Helix 25	25	A	504	516	Right-handed alpha
Helix 26	26	A	549	562	Right-handed alpha
Helix 27	27	A	592	597	Right-handed alpha
Helix 28	28	A	628	632	Right-handed 310
Helix 29	29	A	637	642	Right-handed alpha
Helix 30	30	A	642	656	Right-handed alpha
Helix 31	31	B	98	102	Right-handed 310
Helix 32	32	B	103	115	Right-handed alpha
Helix 33	33	B	125	132	Right-handed alpha
Helix 34	34	B	148	157	Right-handed alpha
Helix 35	35	B	164	182	Right-handed alpha
Helix 36	36	B	183	195	Right-handed alpha
Helix 37	37	B	203	212	Right-handed alpha
Helix 38	38	B	220	230	Right-handed alpha
Helix 39	39	B	233	238	Right-handed alpha
Helix 40	40	B	242	260	Right-handed alpha
Helix 41	41	B	264	272	Right-handed alpha
Helix 42	42	B	276	280	Right-handed 310
Helix 43	43	B	296	298	Right-handed 310
Helix 44	44	B	299	311	Right-handed alpha
Helix 45	45	B	312	317	Right-handed 310
Helix 46	46	B	320	325	Right-handed alpha
Helix 47	47	B	336	350	Right-handed alpha
Helix 48	48	B	397	399	Right-handed 310
Helix 49	49	B	400	405	Right-handed alpha
Helix 50	50	B	405	413	Right-handed alpha
Helix 51	51	B	447	453	Right-handed alpha
Helix 52	52	B	455	470	Right-handed alpha
Helix 53	53	B	473	482	Right-handed alpha
Helix 54	54	B	491	496	Right-handed alpha
Helix 55	55	B	504	516	Right-handed alpha
Helix 56	56	B	549	562	Right-handed alpha
Helix 57	57	B	592	597	Right-handed alpha
Helix 58	58	B	628	632	Right-handed 310
Helix 59	59	B	637	642	Right-handed alpha
Helix 60	60	B	642	656	Right-handed alpha
Helix 61	61	C	98	102	Right-handed 310
Helix 62	62	C	103	115	Right-handed alpha
Helix 63	63	C	125	132	Right-handed alpha
Helix 64	64	C	148	158	Right-handed alpha
Helix 65	65	C	166	182	Right-handed alpha
Helix 66	66	C	183	195	Right-handed alpha
Helix 67	67	C	203	212	Right-handed alpha
Helix 68	68	C	220	230	Right-handed alpha
Helix 69	69	C	233	238	Right-handed alpha
Helix 70	70	C	242	260	Right-handed alpha
Helix 71	71	C	264	272	Right-handed alpha
Helix 72	72	C	276	280	Right-handed 310
Helix 73	73	C	286	290	Right-handed 310
Helix 74	74	C	296	298	Right-handed 310
Helix 75	75	C	299	311	Right-handed alpha
Helix 76	76	C	320	325	Right-handed alpha
Helix 77	77	C	336	350	Right-handed alpha
Helix 78	78	C	397	399	Right-handed 310
Helix 79	79	C	400	405	Right-handed alpha
Helix 80	80	C	405	413	Right-handed alpha
Helix 81	81	C	447	453	Right-handed alpha
Helix 82	82	C	455	470	Right-handed alpha
Helix 83	83	C	473	482	Right-handed alpha
Helix 84	84	C	491	496	Right-handed alpha
Helix 85	85	C	504	516	Right-handed alpha
Helix 86	86	C	549	562	Right-handed alpha
Helix 87	87	C	592	597	Right-handed alpha
Helix 88	88	C	628	632	Right-handed 310
Helix 89	89	C	637	642	Right-handed alpha
Helix 90	90	C	642	656	Right-handed alpha
Helix 91	91	D	98	102	Right-handed 310
Helix 92	92	D	103	115	Right-handed alpha
Helix 93	93	D	116	120	Right-handed 310
Helix 94	94	D	125	130	Right-handed alpha
Helix 95	95	D	148	158	Right-handed alpha
Helix 96	96	D	164	182	Right-handed alpha
Helix 97	97	D	183	195	Right-handed alpha
Helix 98	98	D	203	212	Right-handed alpha
Helix 99	99	D	220	230	Right-handed alpha
Helix 100	100	D	233	238	Right-handed alpha
Helix 101	101	D	242	260	Right-handed alpha
Helix 102	102	D	264	272	Right-handed alpha
Helix 103	103	D	276	280	Right-handed 310
Helix 104	104	D	284	289	Right-handed alpha
Helix 105	105	D	296	298	Right-handed 310
Helix 106	106	D	299	311	Right-handed alpha
Helix 107	107	D	312	317	Right-handed 310
Helix 108	108	D	320	325	Right-handed alpha
Helix 109	109	D	336	350	Right-handed alpha
Helix 110	110	D	397	399	Right-handed 310
Helix 111	111	D	400	405	Right-handed alpha
Helix 112	112	D	405	414	Right-handed alpha
Helix 113	113	D	447	453	Right-handed alpha
Helix 114	114	D	455	470	Right-handed alpha
Helix 115	115	D	473	482	Right-handed alpha
Helix 116	116	D	491	496	Right-handed alpha
Helix 117	117	D	504	516	Right-handed alpha
Helix 118	118	D	549	562	Right-handed alpha
Helix 119	119	D	592	597	Right-handed alpha
Helix 120	120	D	628	632	Right-handed 310
Helix 121	121	D	637	642	Right-handed alpha
Helix 122	122	D	642	656	Right-handed alpha

There are 28 sheets in PDB entry 3DWK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	75	78	anti-parallel
Strand 3	A	330	333	parallel
Strand 4	A	527	531	anti-parallel
Strand 5	A	537	539	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	358	366	anti-parallel
Strand 3	A	616	624	anti-parallel
Strand 4	A	603	612	anti-parallel
Strand 5	A	581	588	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	358	366	anti-parallel
Strand 3	A	616	624	anti-parallel
Strand 4	A	603	612	anti-parallel
Strand 5	A	635	636	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	502	503	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	444	446	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	544	546	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	672	first strand
Strand 2	A	675	678	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	330	333	parallel
Strand 4	B	527	531	anti-parallel
Strand 5	B	537	539	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	358	366	anti-parallel
Strand 3	B	616	624	anti-parallel
Strand 4	B	603	612	anti-parallel
Strand 5	B	581	588	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	358	366	anti-parallel
Strand 3	B	616	624	anti-parallel
Strand 4	B	603	612	anti-parallel
Strand 5	B	635	636	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	502	503	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	444	446	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	544	546	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	669	672	first strand
Strand 2	B	675	678	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	75	78	anti-parallel
Strand 3	C	330	333	parallel
Strand 4	C	527	531	anti-parallel
Strand 5	C	537	539	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	358	366	anti-parallel
Strand 3	C	616	624	anti-parallel
Strand 4	C	603	612	anti-parallel
Strand 5	C	581	588	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	358	366	anti-parallel
Strand 3	C	616	624	anti-parallel
Strand 4	C	603	612	anti-parallel
Strand 5	C	635	636	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	502	503	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	422	first strand
Strand 2	C	444	446	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	544	546	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	672	first strand
Strand 2	C	675	678	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	75	78	anti-parallel
Strand 3	D	330	333	parallel
Strand 4	D	527	531	anti-parallel
Strand 5	D	537	539	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	376	first strand
Strand 2	D	358	366	anti-parallel
Strand 3	D	616	624	anti-parallel
Strand 4	D	603	612	anti-parallel
Strand 5	D	581	588	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	376	first strand
Strand 2	D	358	366	anti-parallel
Strand 3	D	616	624	anti-parallel
Strand 4	D	603	612	anti-parallel
Strand 5	D	635	636	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	395	first strand
Strand 2	D	502	503	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	422	first strand
Strand 2	D	444	446	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	544	546	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	669	672	first strand
Strand 2	D	675	678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3DWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWK