Analysis of interatomic Contacts of Structural Units in PDB entry:
3DXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DXI entry

There are 2 chains in PDB entry 3DXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 302
B
 LEU 1LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 3DXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 12Right-handed alpha
Helix 2
2
A
13 16Right-handed 310
Helix 3
3
A
20 33Right-handed alpha
Helix 4
4
A
53 58Right-handed alpha
Helix 5
5
A
59 70Right-handed alpha
Helix 6
6
A
81 83Right-handed 310
Helix 7
7
A
84 86Right-handed 310
Helix 8
8
A
87 93Right-handed alpha
Helix 9
9
A
94 96Right-handed 310
Helix 10
10
A
107 109Right-handed 310
Helix 11
11
A
110 123Right-handed alpha
Helix 12
12
A
137 141Right-handed 310
Helix 13
13
A
144 152Right-handed 310
Helix 14
14
A
168 183Right-handed alpha
Helix 15
15
A
197 208Right-handed alpha
Helix 16
16
A
216 220Right-handed 310
Helix 17
17
A
228 240Right-handed alpha
Helix 18
18
A
245 264Right-handed alpha
Helix 19
19
A
268 277Right-handed alpha
Helix 20
20
A
280 289Right-handed alpha
Helix 21
21
A
294 301Right-handed alpha
Helix 22
22
B
6 12Right-handed alpha
Helix 23
23
B
20 33Right-handed alpha
Helix 24
24
B
53 57Right-handed 310
Helix 25
25
B
59 70Right-handed alpha
Helix 26
26
B
81 83Right-handed 310
Helix 27
27
B
84 86Right-handed 310
Helix 28
28
B
87 93Right-handed alpha
Helix 29
29
B
94 96Right-handed 310
Helix 30
30
B
107 109Right-handed 310
Helix 31
31
B
110 124Right-handed alpha
Helix 32
32
B
134 139Right-handed alpha
Helix 33
33
B
144 152Right-handed 310
Helix 34
34
B
168 183Right-handed alpha
Helix 35
35
B
197 208Right-handed alpha
Helix 36
36
B
216 220Right-handed 310
Helix 37
37
B
228 240Right-handed alpha
Helix 38
38
B
245 264Right-handed alpha
Helix 39
39
B
268 277Right-handed alpha
Helix 40
40
B
280 289Right-handed alpha
Helix 41
41
B
294 301Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3DXI. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
38 43parallel
Strand 3
A
73 79parallel
Strand 4
A
101 106parallel
Strand 5
A
127 132parallel
Strand 6
A
157 161parallel
Strand 7
A
187 190parallel
Strand 8
A
212 215parallel
Strand 9
A
2 5parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
38 43parallel
Strand 3
B
73 79parallel
Strand 4
B
101 106parallel
Strand 5
B
127 132parallel
Strand 6
B
157 161parallel
Strand 7
B
187 190parallel
Strand 8
B
212 215parallel
Strand 9
B
2 5parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il