Analysis of interatomic Contacts of Structural Units in PDB entry:
3DXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DXL entry

There is 1 chain in PDB entry 3DXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3DXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 21Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
44 58Right-handed alpha
Helix 4
4
A
70 80Right-handed alpha
Helix 5
5
A
81 84Right-handed 310
Helix 6
6
A
85 98Right-handed alpha
Helix 7
7
A
105 120Right-handed alpha
Helix 8
8
A
120 128Right-handed alpha
Helix 9
9
A
131 143Right-handed alpha
Helix 10
10
A
144 146Right-handed 310
Helix 11
11
A
152 162Right-handed alpha
Helix 12
12
A
168 170Right-handed 310
Helix 13
13
A
171 176Right-handed alpha
Helix 14
14
A
183 197Right-handed alpha
Helix 15
15
A
207 218Right-handed alpha
Helix 16
16
A
222 235Right-handed alpha
Helix 17
17
A
239 241Right-handed 310
Helix 18
18
A
242 254Right-handed alpha
Helix 19
19
A
256 272Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3DXL. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il