Analysis of interatomic Contacts of Structural Units in PDB entry:
3DXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DXX entry

There is 1 chain in PDB entry 3DXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 35HIS 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 3DXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 46Right-handed alpha
Helix 2
2
A
55 61Right-handed alpha
Helix 3
3
A
75 85Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
121 130Right-handed alpha
Helix 6
6
A
148 155Right-handed 310
Helix 7
7
A
158 168Right-handed alpha
Helix 8
8
A
181 194Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3DXX.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
89 93parallel
Strand 3
A
66 70parallel
Strand 4
A
135 141parallel
Strand 5
A
169 179parallel
Strand 6
A
231 237anti-parallel
Strand 7
A
198 200anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il