Analysis of interatomic Contacts of Structural Units in PDB entry:
3DY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DY0 entry

There are 2 chains in PDB entry 3DY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26PHE 353
B
 SER 360PRO 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3DY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 41Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
A
65 76Right-handed alpha
Helix 4
4
A
81 99Right-handed alpha
Helix 5
5
A
123 135Right-handed alpha
Helix 6
6
A
145 161Right-handed alpha
Helix 7
7
A
195 199Right-handed 310
Helix 8
8
A
255 263Right-handed alpha
Helix 9
9
A
264 275Right-handed alpha
Helix 10
10
A
296 303Right-handed 310
Helix 11
11
A
305 309Right-handed 310
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There are 3 sheets in PDB entry 3DY0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
B
378 384anti-parallel
Strand 3
B
369 374anti-parallel
Strand 4
A
245 251anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
211 228anti-parallel
Strand 7
A
200 205anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
B
378 384anti-parallel
Strand 3
B
369 374anti-parallel
Strand 4
A
245 251anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
211 228anti-parallel
Strand 7
A
276 285anti-parallel
Strand 8
B
361 364parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
107 116parallel
Strand 3
A
176 189anti-parallel
Strand 4
A
340 352anti-parallel
Strand 5
A
324 336anti-parallel
Strand 6
A
287 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il