Analysis of interatomic Contacts of Structural Units in PDB entry:
3DY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DY5 entry

There are 2 chains in PDB entry 3DY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 3ILE 1066
C
 TRP 3ILE 1066
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3DY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
21 28Right-handed alpha
Helix 4
4
A
37 59Right-handed alpha
Helix 5
5
A
146 152Right-handed alpha
Helix 6
6
A
159 167Right-handed alpha
Helix 7
7
A
169 175Right-handed alpha
Helix 8
8
A
175 180Right-handed alpha
Helix 9
9
A
186 190Right-handed 310
Helix 10
10
A
222 226Right-handed 310
Helix 11
11
A
231 237Right-handed alpha
Helix 12
12
A
283 288Right-handed 310
Helix 13
13
A
294 298Right-handed 310
Helix 14
14
A
313 318Right-handed alpha
Helix 15
15
A
343 363Right-handed alpha
Helix 16
16
A
498 516Right-handed alpha
Helix 17
17
A
538 542Right-handed 310
Helix 18
18
A
544 560Right-handed alpha
Helix 19
19
A
561 564Right-handed 310
Helix 20
20
A
601 611Right-handed alpha
Helix 21
21
A
645 650Right-handed alpha
Helix 22
22
A
660 663Right-handed 310
Helix 23
23
A
733 754Right-handed alpha
Helix 24
24
A
762 776Right-handed alpha
Helix 25
25
A
780 791Right-handed alpha
Helix 26
26
A
792 800Right-handed alpha
Helix 27
27
A
820 831Right-handed alpha
Helix 28
28
A
832 833Right-handed 310
Helix 29
29
A
834 838Right-handed 310
Helix 30
30
A
839 847Right-handed alpha
Helix 31
31
A
858 883Right-handed alpha
Helix 32
32
A
885 892Right-handed alpha
Helix 33
33
A
892 905Right-handed alpha
Helix 34
34
A
924 940Right-handed alpha
Helix 35
35
A
940 948Right-handed alpha
Helix 36
36
A
949 951Right-handed 310
Helix 37
37
A
976 984Right-handed alpha
Helix 38
38
A
986 1001Right-handed alpha
Helix 39
39
A
1020 1045Right-handed alpha
Helix 40
40
C
7 16Right-handed alpha
Helix 41
41
C
16 21Right-handed alpha
Helix 42
42
C
21 28Right-handed alpha
Helix 43
43
C
37 59Right-handed alpha
Helix 44
44
C
146 152Right-handed alpha
Helix 45
45
C
159 167Right-handed alpha
Helix 46
46
C
169 175Right-handed alpha
Helix 47
47
C
175 180Right-handed alpha
Helix 48
48
C
186 190Right-handed 310
Helix 49
49
C
222 226Right-handed 310
Helix 50
50
C
231 237Right-handed alpha
Helix 51
51
C
283 288Right-handed 310
Helix 52
52
C
294 298Right-handed 310
Helix 53
53
C
313 318Right-handed alpha
Helix 54
54
C
343 363Right-handed alpha
Helix 55
55
C
498 516Right-handed alpha
Helix 56
56
C
538 542Right-handed 310
Helix 57
57
C
544 560Right-handed alpha
Helix 58
58
C
561 564Right-handed 310
Helix 59
59
C
601 611Right-handed alpha
Helix 60
60
C
645 650Right-handed alpha
Helix 61
61
C
660 663Right-handed 310
Helix 62
62
C
733 754Right-handed alpha
Helix 63
63
C
762 776Right-handed alpha
Helix 64
64
C
780 791Right-handed alpha
Helix 65
65
C
792 800Right-handed alpha
Helix 66
66
C
820 831Right-handed alpha
Helix 67
67
C
832 833Right-handed 310
Helix 68
68
C
834 838Right-handed 310
Helix 69
69
C
839 847Right-handed alpha
Helix 70
70
C
858 883Right-handed alpha
Helix 71
71
C
885 892Right-handed alpha
Helix 72
72
C
892 905Right-handed alpha
Helix 73
73
C
924 948Right-handed alpha
Helix 74
74
C
949 951Right-handed 310
Helix 75
75
C
976 984Right-handed alpha
Helix 76
76
C
986 1001Right-handed alpha
Helix 77
77
C
1020 1045Right-handed alpha
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There are 10 sheets in PDB entry 3DY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
207 216anti-parallel
Strand 3
A
267 277anti-parallel
Strand 4
A
301 311anti-parallel
Strand 5
A
73 79anti-parallel
Strand 6
A
97 102anti-parallel
Strand 7
A
118 122anti-parallel
Strand 8
A
133 137anti-parallel
Strand 9
A
192 193anti-parallel
Strand 10
A
207 216anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 429first strand
Strand 2
A
375 382anti-parallel
Strand 3
A
455 464anti-parallel
Strand 4
A
471 479anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
394 400anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
482 485anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
A
528 529anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
654 658anti-parallel
Strand 3
A
698 703anti-parallel
Strand 4
A
709 715anti-parallel
Strand 5
A
726 727anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 201first strand
Strand 2
C
207 216anti-parallel
Strand 3
C
267 277anti-parallel
Strand 4
C
301 311anti-parallel
Strand 5
C
73 79anti-parallel
Strand 6
C
97 102anti-parallel
Strand 7
C
118 122anti-parallel
Strand 8
C
133 137anti-parallel
Strand 9
C
192 193anti-parallel
Strand 10
C
207 216anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
423 429first strand
Strand 2
C
375 382anti-parallel
Strand 3
C
455 464anti-parallel
Strand 4
C
471 479anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 410first strand
Strand 2
C
394 400anti-parallel
Strand 3
C
436 442anti-parallel
Strand 4
C
482 485anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
518 519first strand
Strand 2
C
528 529anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
618 620first strand
Strand 2
C
654 658anti-parallel
Strand 3
C
698 703anti-parallel
Strand 4
C
709 715anti-parallel
Strand 5
C
726 727anti-parallel
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