Analysis of interatomic Contacts of Structural Units in PDB entry:
3DYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DYJ entry

There are 2 chains in PDB entry 3DYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1975LYS 2291
B
 THR 1975LYS 2291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3DYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1975 2001Right-handed alpha
Helix 2
2
A
2011 2014Right-handed 310
Helix 3
3
A
2015 2037Right-handed alpha
Helix 4
4
A
2040 2069Right-handed alpha
Helix 5
5
A
2073 2101Right-handed alpha
Helix 6
6
A
2108 2162Right-handed alpha
Helix 7
7
A
2171 2196Right-handed alpha
Helix 8
8
A
2197 2224Right-handed alpha
Helix 9
9
A
2229 2260Right-handed alpha
Helix 10
10
A
2262 2289Right-handed alpha
Helix 11
11
B
1975 2001Right-handed alpha
Helix 12
12
B
2011 2038Right-handed alpha
Helix 13
13
B
2040 2069Right-handed alpha
Helix 14
14
B
2073 2102Right-handed alpha
Helix 15
15
B
2108 2161Right-handed alpha
Helix 16
16
B
2171 2196Right-handed alpha
Helix 17
17
B
2197 2224Right-handed alpha
Helix 18
18
B
2229 2260Right-handed alpha
Helix 19
19
B
2262 2290Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3DYJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il