Analysis of interatomic Contacts of Structural Units in PDB entry:
3DYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DYT entry

There is 1 chain in PDB entry 3DYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 230MSE 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3DYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
256 260Right-handed 310
Helix 2
2
A
287 302Right-handed alpha
Helix 3
3
A
323 340Right-handed alpha
Helix 4
4
A
343 346Right-handed 310
Helix 5
5
A
347 356Right-handed alpha
Helix 6
6
A
358 371Right-handed alpha
Helix 7
7
A
375 381Right-handed 310
Helix 8
8
A
391 429Right-handed alpha
Helix 9
9
A
429 451Right-handed alpha
Helix 10
10
A
452 453Right-handed 310
Helix 11
11
A
454 456Right-handed 310
Helix 12
12
A
457 481Right-handed alpha
Helix 13
13
A
482 484Right-handed 310
Helix 14
14
A
485 501Right-handed alpha
Helix 15
15
A
502 519Right-handed alpha
Helix 16
16
A
519 526Right-handed alpha
Helix 17
17
A
530 591Right-handed alpha
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There are 2 sheets in PDB entry 3DYT. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
383 385parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
283 286anti-parallel
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