Analysis of interatomic Contacts of Structural Units in PDB entry:
3DYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DYU entry

There are 3 chains in PDB entry 3DYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 230MET 595
B
 GLU 230MET 595
C
 GLU 230MET 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3DYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
287 302Right-handed alpha
Helix 2
2
A
320 340Right-handed alpha
Helix 3
3
A
347 355Right-handed alpha
Helix 4
4
A
360 371Right-handed alpha
Helix 5
5
A
375 381Right-handed 310
Helix 6
6
A
391 428Right-handed alpha
Helix 7
7
A
429 450Right-handed alpha
Helix 8
8
A
458 480Right-handed alpha
Helix 9
9
A
481 484Right-handed 310
Helix 10
10
A
485 502Right-handed alpha
Helix 11
11
A
503 508Right-handed 310
Helix 12
12
A
509 517Right-handed alpha
Helix 13
13
A
518 526Right-handed alpha
Helix 14
14
A
530 590Right-handed alpha
Helix 15
15
B
287 302Right-handed alpha
Helix 16
16
B
320 340Right-handed alpha
Helix 17
17
B
347 355Right-handed alpha
Helix 18
18
B
360 371Right-handed alpha
Helix 19
19
B
375 381Right-handed 310
Helix 20
20
B
391 428Right-handed alpha
Helix 21
21
B
429 450Right-handed alpha
Helix 22
22
B
458 480Right-handed alpha
Helix 23
23
B
481 484Right-handed 310
Helix 24
24
B
485 502Right-handed alpha
Helix 25
25
B
502 517Right-handed alpha
Helix 26
26
B
518 526Right-handed alpha
Helix 27
27
B
530 590Right-handed alpha
Helix 28
28
C
286 302Right-handed alpha
Helix 29
29
C
320 340Right-handed alpha
Helix 30
30
C
347 355Right-handed alpha
Helix 31
31
C
360 371Right-handed alpha
Helix 32
32
C
375 381Right-handed 310
Helix 33
33
C
391 428Right-handed alpha
Helix 34
34
C
429 450Right-handed alpha
Helix 35
35
C
458 480Right-handed alpha
Helix 36
36
C
481 484Right-handed 310
Helix 37
37
C
485 502Right-handed alpha
Helix 38
38
C
502 517Right-handed alpha
Helix 39
39
C
518 526Right-handed alpha
Helix 40
40
C
530 590Right-handed alpha
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There are 6 sheets in PDB entry 3DYU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
383 385parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 259first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
283 286anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
232 235anti-parallel
Strand 3
B
383 385parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 259first strand
Strand 2
B
270 276anti-parallel
Strand 3
B
283 286anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
232 235anti-parallel
Strand 3
C
383 385parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
274 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il