Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZA entry

There are 4 chains in PDB entry 3DZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38VAL 217
B
 ALA 38VAL 217
C
 ALA 43VAL 217
D
 ALA 42VAL 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3DZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 55Right-handed alpha
Helix 2
2
A
58 76Right-handed alpha
Helix 3
3
A
79 95Right-handed alpha
Helix 4
4
A
97 103Right-handed alpha
Helix 5
5
A
134 150Right-handed alpha
Helix 6
6
A
152 163Right-handed alpha
Helix 7
7
A
176 192Right-handed alpha
Helix 8
8
A
194 208Right-handed alpha
Helix 9
9
B
43 55Right-handed alpha
Helix 10
10
B
58 76Right-handed alpha
Helix 11
11
B
79 95Right-handed alpha
Helix 12
12
B
97 102Right-handed alpha
Helix 13
13
B
103 105Right-handed 310
Helix 14
14
B
134 150Right-handed alpha
Helix 15
15
B
152 163Right-handed alpha
Helix 16
16
B
176 192Right-handed alpha
Helix 17
17
B
194 208Right-handed alpha
Helix 18
18
C
43 56Right-handed alpha
Helix 19
19
C
58 77Right-handed alpha
Helix 20
20
C
79 95Right-handed alpha
Helix 21
21
C
97 103Right-handed alpha
Helix 22
22
C
134 150Right-handed alpha
Helix 23
23
C
152 163Right-handed alpha
Helix 24
24
C
176 192Right-handed alpha
Helix 25
25
C
194 208Right-handed alpha
Helix 26
26
D
42 55Right-handed alpha
Helix 27
27
D
58 77Right-handed alpha
Helix 28
28
D
79 95Right-handed alpha
Helix 29
29
D
97 102Right-handed alpha
Helix 30
30
D
103 105Right-handed 310
Helix 31
31
D
134 150Right-handed alpha
Helix 32
32
D
152 163Right-handed alpha
Helix 33
33
D
176 192Right-handed alpha
Helix 34
34
D
194 208Right-handed alpha
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There are 4 sheets in PDB entry 3DZA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 128first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
210 214anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 128first strand
Strand 2
B
166 175anti-parallel
Strand 3
B
210 214anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 128first strand
Strand 2
C
166 175anti-parallel
Strand 3
C
210 215anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 128first strand
Strand 2
D
166 175anti-parallel
Strand 3
D
210 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il