Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZB entry

There are 2 chains in PDB entry 3DZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4PHE 298
B
 LYS 4MSE 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3DZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
56 61Right-handed alpha
Helix 4
4
A
62 64Right-handed 310
Helix 5
5
A
72 84Right-handed alpha
Helix 6
6
A
101 113Right-handed alpha
Helix 7
7
A
157 166Right-handed alpha
Helix 8
8
A
167 170Right-handed 310
Helix 9
9
A
177 189Right-handed alpha
Helix 10
10
A
189 210Right-handed alpha
Helix 11
11
A
211 217Right-handed alpha
Helix 12
12
A
218 226Right-handed alpha
Helix 13
13
A
227 230Right-handed 310
Helix 14
14
A
231 242Right-handed alpha
Helix 15
15
A
242 266Right-handed alpha
Helix 16
16
A
268 286Right-handed alpha
Helix 17
17
A
287 291Right-handed 310
Helix 18
18
B
12 25Right-handed alpha
Helix 19
19
B
37 47Right-handed alpha
Helix 20
20
B
56 64Right-handed 310
Helix 21
21
B
72 84Right-handed alpha
Helix 22
22
B
101 113Right-handed alpha
Helix 23
23
B
157 166Right-handed alpha
Helix 24
24
B
167 170Right-handed 310
Helix 25
25
B
177 189Right-handed alpha
Helix 26
26
B
189 208Right-handed alpha
Helix 27
27
B
209 211Right-handed 310
Helix 28
28
B
212 217Right-handed alpha
Helix 29
29
B
218 226Right-handed alpha
Helix 30
30
B
227 229Right-handed 310
Helix 31
31
B
231 241Right-handed alpha
Helix 32
32
B
242 266Right-handed alpha
Helix 33
33
B
268 285Right-handed alpha
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There are 3 sheets in PDB entry 3DZB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
30 34parallel
Strand 3
A
5 8parallel
Strand 4
A
66 68parallel
Strand 5
A
93 95parallel
Strand 6
A
118 119parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
145 149anti-parallel
Strand 3
A
172 175parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
30 34parallel
Strand 3
B
5 9parallel
Strand 4
B
66 69parallel
Strand 5
B
93 95parallel
Strand 6
B
118 124parallel
Strand 7
B
145 149anti-parallel
Strand 8
B
172 175parallel
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