Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZD entry

There are 2 chains in PDB entry 3DZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PRO 369
B
 LYS 2PRO 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3DZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
62 71Right-handed alpha
Helix 4
4
A
85 95Right-handed alpha
Helix 5
5
A
105 121Right-handed alpha
Helix 6
6
A
136 151Right-handed alpha
Helix 7
7
A
165 178Right-handed alpha
Helix 8
8
A
195 201Right-handed alpha
Helix 9
9
A
217 222Right-handed alpha
Helix 10
10
A
231 235Right-handed 310
Helix 11
11
A
236 250Right-handed alpha
Helix 12
12
A
274 281Right-handed alpha
Helix 13
13
A
285 293Right-handed alpha
Helix 14
14
A
301 306Right-handed 310
Helix 15
15
A
307 324Right-handed alpha
Helix 16
16
A
332 341Right-handed alpha
Helix 17
17
A
346 361Right-handed alpha
Helix 18
18
B
10 24Right-handed alpha
Helix 19
19
B
33 44Right-handed alpha
Helix 20
20
B
62 71Right-handed alpha
Helix 21
21
B
85 94Right-handed alpha
Helix 22
22
B
105 122Right-handed alpha
Helix 23
23
B
136 151Right-handed alpha
Helix 24
24
B
165 178Right-handed alpha
Helix 25
25
B
194 201Right-handed alpha
Helix 26
26
B
217 222Right-handed alpha
Helix 27
27
B
232 235Right-handed 310
Helix 28
28
B
236 250Right-handed alpha
Helix 29
29
B
274 281Right-handed alpha
Helix 30
30
B
285 293Right-handed alpha
Helix 31
31
B
301 306Right-handed 310
Helix 32
32
B
307 324Right-handed alpha
Helix 33
33
B
332 340Right-handed alpha
Helix 34
34
B
346 361Right-handed alpha
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There are 11 sheets in PDB entry 3DZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
3 7parallel
Strand 3
A
48 52parallel
Strand 4
A
75 80parallel
Strand 5
A
98 101parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 59anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
226 230parallel
Strand 3
A
266 271parallel
Strand 4
A
156 159parallel
Strand 5
A
295 298parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
261 262anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
3 7parallel
Strand 3
B
48 52parallel
Strand 4
B
75 80parallel
Strand 5
B
98 101parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
226 230parallel
Strand 3
B
266 271parallel
Strand 4
B
156 159parallel
Strand 5
B
295 298parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
261 262anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
366 367parallel
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