Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZF entry

There are 6 chains in PDB entry 3DZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 45CYS 296
B
 ARG 45CYS 296
C
 ARG 45CYS 296
D
 ARG 45CYS 296
E
 ARG 45CYS 296
F
 ARG 45CYS 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 85 helices in PDB entry 3DZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 74Right-handed alpha
Helix 2
2
A
75 80Right-handed 310
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
118 121Right-handed 310
Helix 7
7
A
128 137Right-handed alpha
Helix 8
8
A
144 147Right-handed 310
Helix 9
9
A
148 155Right-handed alpha
Helix 10
10
A
183 200Right-handed alpha
Helix 11
11
A
220 225Right-handed alpha
Helix 12
12
A
226 229Right-handed 310
Helix 13
13
A
252 255Right-handed 310
Helix 14
14
A
256 268Right-handed alpha
Helix 15
15
A
280 290Right-handed alpha
Helix 16
16
B
58 74Right-handed alpha
Helix 17
17
B
75 78Right-handed 310
Helix 18
18
B
81 94Right-handed alpha
Helix 19
19
B
103 105Right-handed 310
Helix 20
20
B
106 113Right-handed alpha
Helix 21
21
B
128 138Right-handed alpha
Helix 22
22
B
144 147Right-handed 310
Helix 23
23
B
148 155Right-handed alpha
Helix 24
24
B
183 200Right-handed alpha
Helix 25
25
B
220 225Right-handed alpha
Helix 26
26
B
226 229Right-handed 310
Helix 27
27
B
252 255Right-handed 310
Helix 28
28
B
256 269Right-handed alpha
Helix 29
29
B
280 290Right-handed alpha
Helix 30
30
C
58 74Right-handed alpha
Helix 31
31
C
75 78Right-handed 310
Helix 32
32
C
81 94Right-handed alpha
Helix 33
33
C
102 105Right-handed 310
Helix 34
34
C
106 113Right-handed alpha
Helix 35
35
C
128 139Right-handed alpha
Helix 36
36
C
144 147Right-handed 310
Helix 37
37
C
148 155Right-handed alpha
Helix 38
38
C
183 199Right-handed alpha
Helix 39
39
C
220 225Right-handed alpha
Helix 40
40
C
226 230Right-handed 310
Helix 41
41
C
252 255Right-handed 310
Helix 42
42
C
256 268Right-handed alpha
Helix 43
43
C
280 290Right-handed alpha
Helix 44
44
D
58 74Right-handed alpha
Helix 45
45
D
75 78Right-handed 310
Helix 46
46
D
81 94Right-handed alpha
Helix 47
47
D
102 105Right-handed 310
Helix 48
48
D
106 113Right-handed alpha
Helix 49
49
D
128 139Right-handed alpha
Helix 50
50
D
144 147Right-handed 310
Helix 51
51
D
148 155Right-handed alpha
Helix 52
52
D
183 200Right-handed alpha
Helix 53
53
D
220 225Right-handed alpha
Helix 54
54
D
226 229Right-handed 310
Helix 55
55
D
252 255Right-handed 310
Helix 56
56
D
256 269Right-handed alpha
Helix 57
57
D
280 290Right-handed alpha
Helix 58
58
E
58 74Right-handed alpha
Helix 59
59
E
75 78Right-handed 310
Helix 60
60
E
81 94Right-handed alpha
Helix 61
61
E
102 105Right-handed 310
Helix 62
62
E
106 113Right-handed alpha
Helix 63
63
E
118 121Right-handed 310
Helix 64
64
E
128 138Right-handed alpha
Helix 65
65
E
144 147Right-handed 310
Helix 66
66
E
148 155Right-handed alpha
Helix 67
67
E
183 200Right-handed alpha
Helix 68
68
E
220 225Right-handed alpha
Helix 69
69
E
225 230Right-handed alpha
Helix 70
70
E
252 255Right-handed 310
Helix 71
71
E
256 268Right-handed alpha
Helix 72
72
E
280 290Right-handed alpha
Helix 73
73
F
58 74Right-handed alpha
Helix 74
74
F
75 78Right-handed 310
Helix 75
75
F
81 94Right-handed alpha
Helix 76
76
F
102 113Right-handed alpha
Helix 77
77
F
128 139Right-handed alpha
Helix 78
78
F
144 147Right-handed 310
Helix 79
79
F
148 155Right-handed alpha
Helix 80
80
F
183 199Right-handed alpha
Helix 81
81
F
220 225Right-handed alpha
Helix 82
82
F
226 230Right-handed 310
Helix 83
83
F
252 255Right-handed 310
Helix 84
84
F
256 269Right-handed alpha
Helix 85
85
F
280 290Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3DZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
202 209parallel
Strand 3
A
235 243parallel
Strand 4
A
272 278parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
202 209parallel
Strand 3
B
235 243parallel
Strand 4
B
272 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 126first strand
Strand 2
C
202 209parallel
Strand 3
C
235 243parallel
Strand 4
C
272 278parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 126first strand
Strand 2
D
202 209parallel
Strand 3
D
235 243parallel
Strand 4
D
272 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 53first strand
Strand 2
E
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 126first strand
Strand 2
E
202 209parallel
Strand 3
E
235 243parallel
Strand 4
E
272 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
123 126first strand
Strand 2
F
202 209parallel
Strand 3
F
235 243parallel
Strand 4
F
272 278parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il