Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZM entry

There are 3 chains in PDB entry 3DZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PHE 207
B
 HIS 0PHE 207
C
 ALA 2PHE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3DZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 67Right-handed alpha
Helix 2
2
A
182 190Right-handed alpha
Helix 3
3
B
58 67Right-handed alpha
Helix 4
4
B
182 190Right-handed alpha
Helix 5
5
C
58 65Right-handed alpha
Helix 6
6
C
182 190Right-handed alpha
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There are 3 sheets in PDB entry 3DZM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
120 141anti-parallel
Strand 4
A
144 155anti-parallel
Strand 5
A
195 207anti-parallel
Strand 6
A
3 13anti-parallel
Strand 7
A
16 25anti-parallel
Strand 8
A
33 43anti-parallel
Strand 9
A
69 83anti-parallel
Strand 10
A
93 110anti-parallel
Strand 11
A
120 141anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 176first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
120 141anti-parallel
Strand 4
B
144 155anti-parallel
Strand 5
B
195 206anti-parallel
Strand 6
B
3 13anti-parallel
Strand 7
B
16 25anti-parallel
Strand 8
B
33 43anti-parallel
Strand 9
B
69 83anti-parallel
Strand 10
B
93 110anti-parallel
Strand 11
B
120 141anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 176first strand
Strand 2
C
160 165anti-parallel
Strand 3
C
120 141anti-parallel
Strand 4
C
144 155anti-parallel
Strand 5
C
195 206anti-parallel
Strand 6
C
4 13anti-parallel
Strand 7
C
16 24anti-parallel
Strand 8
C
33 43anti-parallel
Strand 9
C
69 83anti-parallel
Strand 10
C
93 110anti-parallel
Strand 11
C
120 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il