Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZO entry

There is 1 chain in PDB entry 3DZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 190GLN 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3DZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
202 213Right-handed alpha
Helix 2
2
A
214 218Right-handed 310
Helix 3
3
A
228 235Right-handed alpha
Helix 4
4
A
299 308Right-handed alpha
Helix 5
5
A
309 312Right-handed 310
Helix 6
6
A
317 325Right-handed alpha
Helix 7
7
A
368 379Right-handed alpha
Helix 8
8
A
382 407Right-handed alpha
Helix 9
9
A
415 417Right-handed 310
Helix 10
10
A
431 435Right-handed 310
Helix 11
11
A
452 460Right-handed alpha
Helix 12
12
A
463 467Right-handed 310
Helix 13
13
A
472 490Right-handed alpha
Helix 14
14
A
497 501Right-handed 310
Helix 15
15
A
503 508Right-handed 310
Helix 16
16
A
514 525Right-handed alpha
Helix 17
17
A
528 532Right-handed 310
Helix 18
18
A
534 539Right-handed alpha
Helix 19
19
A
541 555Right-handed alpha
Helix 20
20
A
556 559Right-handed 310
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There are 4 sheets in PDB entry 3DZO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
255 266anti-parallel
Strand 3
A
269 276anti-parallel
Strand 4
A
282 288anti-parallel
Strand 5
A
357 362anti-parallel
Strand 6
A
332 335anti-parallel
Strand 7
A
243 248anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
419 421anti-parallel
Strand 3
A
427 429anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
436 437anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
469 471anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il