Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZU entry

There are 6 chains in PDB entry 3DZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 132LEU 455
D
 ALA 108TYR 477
C
 C 3001 G 3020
F
 C 4001 G 4020
G
 LYS 688ASP 696
E
 LYS 688GLN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3DZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
152 166Right-handed alpha
Helix 2
2
A
187 198Right-handed alpha
Helix 3
3
A
201 205Right-handed 310
Helix 4
4
A
231 239Right-handed alpha
Helix 5
5
A
263 285Right-handed alpha
Helix 6
6
A
293 317Right-handed alpha
Helix 7
7
A
333 340Right-handed alpha
Helix 8
8
A
342 353Right-handed alpha
Helix 9
9
A
353 359Right-handed alpha
Helix 10
10
A
363 376Right-handed alpha
Helix 11
11
A
385 408Right-handed alpha
Helix 12
12
A
413 420Right-handed alpha
Helix 13
13
A
421 443Right-handed alpha
Helix 14
14
A
448 455Right-handed alpha
Helix 15
15
D
128 140Right-handed alpha
Helix 16
16
D
162 174Right-handed alpha
Helix 17
17
D
196 201Right-handed alpha
Helix 18
18
D
210 226Right-handed alpha
Helix 19
19
D
229 239Right-handed alpha
Helix 20
20
D
252 257Right-handed alpha
Helix 21
21
D
277 302Right-handed alpha
Helix 22
22
D
310 331Right-handed alpha
Helix 23
23
D
350 354Right-handed alpha
Helix 24
24
D
363 376Right-handed alpha
Helix 25
25
D
380 393Right-handed alpha
Helix 26
26
D
403 425Right-handed alpha
Helix 27
27
D
430 459Right-handed alpha
Helix 28
28
D
466 474Right-handed alpha
Helix 29
29
G
688 694Right-handed alpha
Helix 30
30
E
690 695Right-handed alpha
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There are 4 sheets in PDB entry 3DZU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 122first strand
Strand 2
D
125 126anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
346 349parallel
Strand 3
D
338 341anti-parallel
Strand 4
D
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il