Analysis of interatomic Contacts of Structural Units in PDB entry:
3DZZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DZZ entry

There are 4 chains in PDB entry 3DZZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 232
A
 THR 234ASN 389
B
 LYS 4SER 232
B
 THR 234LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3DZZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
63 79Right-handed alpha
Helix 3
3
A
83 85Right-handed 310
Helix 4
4
A
92 105Right-handed alpha
Helix 5
5
A
118 128Right-handed alpha
Helix 6
6
A
147 156Right-handed alpha
Helix 7
7
A
177 191Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
221 223Right-handed 310
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
249 264Right-handed alpha
Helix 12
12
A
271 283Right-handed alpha
Helix 13
13
A
283 309Right-handed alpha
Helix 14
14
A
328 331Right-handed 310
Helix 15
15
A
333 346Right-handed alpha
Helix 16
16
A
353 356Right-handed 310
Helix 17
17
A
358 360Right-handed 310
Helix 18
18
A
370 387Right-handed alpha
Helix 19
19
B
41 53Right-handed alpha
Helix 20
20
B
63 79Right-handed alpha
Helix 21
21
B
83 85Right-handed 310
Helix 22
22
B
92 105Right-handed alpha
Helix 23
23
B
119 127Right-handed alpha
Helix 24
24
B
147 156Right-handed alpha
Helix 25
25
B
177 191Right-handed alpha
Helix 26
26
B
201 205Right-handed 310
Helix 27
27
B
213 217Right-handed 310
Helix 28
28
B
220 223Right-handed 310
Helix 29
29
B
230 236Right-handed alpha
Helix 30
30
B
237 241Right-handed 310
Helix 31
31
B
249 264Right-handed alpha
Helix 32
32
B
271 283Right-handed alpha
Helix 33
33
B
283 309Right-handed alpha
Helix 34
34
B
328 331Right-handed 310
Helix 35
35
B
333 346Right-handed alpha
Helix 36
36
B
353 356Right-handed 310
Helix 37
37
B
358 360Right-handed 310
Helix 38
38
B
370 387Right-handed alpha
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There are 8 sheets in PDB entry 3DZZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
347 348parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
194 198parallel
Strand 5
A
160 166parallel
Strand 6
A
110 113parallel
Strand 7
A
131 134parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
143 145anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
362 366anti-parallel
Strand 4
A
350 351anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
347 348parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
194 198parallel
Strand 5
B
160 166parallel
Strand 6
B
110 113parallel
Strand 7
B
131 134parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
143 145anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
362 366anti-parallel
Strand 4
B
350 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il