Analysis of interatomic Contacts of Structural Units in PDB entry:
3E00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E00 entry

There are 6 chains in PDB entry 3E00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 132LEU 455
D
 MET 107TYR 477
C
 C 3001 G 3020
F
 C 4001 G 4020
G
 LYS 688ASP 696
E
 LYS 688SER 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3E00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
152 165Right-handed alpha
Helix 2
2
A
187 198Right-handed alpha
Helix 3
3
A
231 239Right-handed alpha
Helix 4
4
A
267 286Right-handed alpha
Helix 5
5
A
293 317Right-handed alpha
Helix 6
6
A
334 339Right-handed alpha
Helix 7
7
A
342 353Right-handed alpha
Helix 8
8
A
353 359Right-handed alpha
Helix 9
9
A
365 376Right-handed alpha
Helix 10
10
A
385 408Right-handed alpha
Helix 11
11
A
413 420Right-handed alpha
Helix 12
12
A
421 440Right-handed alpha
Helix 13
13
A
449 455Right-handed alpha
Helix 14
14
D
130 142Right-handed alpha
Helix 15
15
D
157 161Right-handed 310
Helix 16
16
D
163 174Right-handed alpha
Helix 17
17
D
187 192Right-handed 310
Helix 18
18
D
199 204Right-handed alpha
Helix 19
19
D
207 226Right-handed alpha
Helix 20
20
D
229 239Right-handed alpha
Helix 21
21
D
251 259Right-handed alpha
Helix 22
22
D
276 284Right-handed alpha
Helix 23
23
D
285 302Right-handed alpha
Helix 24
24
D
310 320Right-handed alpha
Helix 25
25
D
320 333Right-handed alpha
Helix 26
26
D
350 354Right-handed alpha
Helix 27
27
D
364 375Right-handed alpha
Helix 28
28
D
380 393Right-handed alpha
Helix 29
29
D
402 425Right-handed alpha
Helix 30
30
D
430 460Right-handed alpha
Helix 31
31
D
466 474Right-handed alpha
Helix 32
32
G
688 696Right-handed alpha
Helix 33
33
E
689 695Right-handed alpha
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There are 4 sheets in PDB entry 3E00. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 121first strand
Strand 2
D
126 127anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
346 349parallel
Strand 3
D
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il