Analysis of interatomic Contacts of Structural Units in PDB entry:
3E04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E04 entry

There are 4 chains in PDB entry 3E04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49PRO 509
B
 SER 49LYS 510
C
 SER 49LYS 510
D
 SER 49LYS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 3E04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 79Right-handed alpha
Helix 2
2
A
83 87Right-handed 310
Helix 3
3
A
89 107Right-handed alpha
Helix 4
4
A
108 111Right-handed 310
Helix 5
5
A
113 129Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
146 165Right-handed alpha
Helix 8
8
A
186 206Right-handed alpha
Helix 9
9
A
206 225Right-handed alpha
Helix 10
10
A
244 265Right-handed alpha
Helix 11
11
A
288 302Right-handed alpha
Helix 12
12
A
310 317Right-handed alpha
Helix 13
13
A
318 346Right-handed alpha
Helix 14
14
A
374 400Right-handed alpha
Helix 15
15
A
408 434Right-handed alpha
Helix 16
16
A
435 438Right-handed 310
Helix 17
17
A
441 452Right-handed alpha
Helix 18
18
A
453 458Right-handed 310
Helix 19
19
A
459 464Right-handed alpha
Helix 20
20
A
464 479Right-handed alpha
Helix 21
21
A
481 489Right-handed alpha
Helix 22
22
A
493 501Right-handed alpha
Helix 23
23
A
502 506Right-handed 310
Helix 24
24
B
69 79Right-handed alpha
Helix 25
25
B
83 87Right-handed 310
Helix 26
26
B
89 108Right-handed alpha
Helix 27
27
B
109 111Right-handed 310
Helix 28
28
B
113 129Right-handed alpha
Helix 29
29
B
132 136Right-handed 310
Helix 30
30
B
146 165Right-handed alpha
Helix 31
31
B
186 206Right-handed alpha
Helix 32
32
B
206 225Right-handed alpha
Helix 33
33
B
244 265Right-handed alpha
Helix 34
34
B
288 302Right-handed alpha
Helix 35
35
B
310 317Right-handed alpha
Helix 36
36
B
318 346Right-handed alpha
Helix 37
37
B
374 400Right-handed alpha
Helix 38
38
B
408 434Right-handed alpha
Helix 39
39
B
435 438Right-handed 310
Helix 40
40
B
441 452Right-handed alpha
Helix 41
41
B
455 458Right-handed 310
Helix 42
42
B
459 464Right-handed alpha
Helix 43
43
B
469 479Right-handed alpha
Helix 44
44
B
481 489Right-handed alpha
Helix 45
45
B
493 501Right-handed alpha
Helix 46
46
B
502 506Right-handed 310
Helix 47
47
C
69 79Right-handed alpha
Helix 48
48
C
83 87Right-handed 310
Helix 49
49
C
89 108Right-handed alpha
Helix 50
50
C
109 111Right-handed 310
Helix 51
51
C
113 129Right-handed alpha
Helix 52
52
C
132 136Right-handed 310
Helix 53
53
C
146 166Right-handed alpha
Helix 54
54
C
186 206Right-handed alpha
Helix 55
55
C
206 225Right-handed alpha
Helix 56
56
C
244 265Right-handed alpha
Helix 57
57
C
288 302Right-handed alpha
Helix 58
58
C
310 317Right-handed alpha
Helix 59
59
C
318 346Right-handed alpha
Helix 60
60
C
374 400Right-handed alpha
Helix 61
61
C
408 434Right-handed alpha
Helix 62
62
C
435 438Right-handed 310
Helix 63
63
C
441 448Right-handed alpha
Helix 64
64
C
502 506Right-handed 310
Helix 65
65
D
69 79Right-handed alpha
Helix 66
66
D
83 87Right-handed 310
Helix 67
67
D
89 107Right-handed alpha
Helix 68
68
D
108 110Right-handed 310
Helix 69
69
D
113 129Right-handed alpha
Helix 70
70
D
132 136Right-handed 310
Helix 71
71
D
146 166Right-handed alpha
Helix 72
72
D
186 206Right-handed alpha
Helix 73
73
D
206 225Right-handed alpha
Helix 74
74
D
244 265Right-handed alpha
Helix 75
75
D
288 302Right-handed alpha
Helix 76
76
D
310 317Right-handed alpha
Helix 77
77
D
318 346Right-handed alpha
Helix 78
78
D
374 400Right-handed alpha
Helix 79
79
D
408 434Right-handed alpha
Helix 80
80
D
435 438Right-handed 310
Helix 81
81
D
441 451Right-handed alpha
Helix 82
82
D
452 458Right-handed 310
Helix 83
83
D
459 464Right-handed alpha
Helix 84
84
D
464 479Right-handed alpha
Helix 85
85
D
481 489Right-handed alpha
Helix 86
86
D
493 501Right-handed alpha
Helix 87
87
D
502 506Right-handed 310
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There are 16 sheets in PDB entry 3E04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 63anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
237 243anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
306 307parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
439 440anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
60 63anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
237 243anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
306 307parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 357first strand
Strand 2
B
439 440anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 55first strand
Strand 2
C
58 63anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
237 243anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 272first strand
Strand 2
C
306 307parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 357first strand
Strand 2
C
439 440anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
58 62anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 234first strand
Strand 2
D
237 243anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
271 272first strand
Strand 2
D
306 307parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
356 357first strand
Strand 2
D
439 440anti-parallel
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