Analysis of interatomic Contacts of Structural Units in PDB entry:
3E05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3E05 entry

There are 8 chains in PDB entry 3E05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 213	SER 403
B	ALA 212	SER 403
C	ALA 212	LYS 402
D	TYR 214	GLU 405
E	GLN 213	SER 403
F	GLN 213	SER 403
G	TYR 214	LYS 402
H	LEU 211	SER 403

There are 49 helices in PDB entry 3E05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	220	224	Right-handed 310
Helix 2	2	A	233	244	Right-handed alpha
Helix 3	3	A	260	270	Right-handed alpha
Helix 4	4	A	281	296	Right-handed alpha
Helix 5	5	A	328	340	Right-handed alpha
Helix 6	6	A	352	366	Right-handed alpha
Helix 7	7	B	220	224	Right-handed 310
Helix 8	8	B	233	244	Right-handed alpha
Helix 9	9	B	260	270	Right-handed alpha
Helix 10	10	B	281	296	Right-handed alpha
Helix 11	11	B	328	340	Right-handed alpha
Helix 12	12	B	352	366	Right-handed alpha
Helix 13	13	C	220	224	Right-handed 310
Helix 14	14	C	233	244	Right-handed alpha
Helix 15	15	C	260	270	Right-handed alpha
Helix 16	16	C	281	296	Right-handed alpha
Helix 17	17	C	310	314	Right-handed 310
Helix 18	18	C	328	340	Right-handed alpha
Helix 19	19	C	352	366	Right-handed alpha
Helix 20	20	D	220	224	Right-handed 310
Helix 21	21	D	233	244	Right-handed alpha
Helix 22	22	D	260	270	Right-handed alpha
Helix 23	23	D	281	295	Right-handed alpha
Helix 24	24	D	328	340	Right-handed alpha
Helix 25	25	D	352	366	Right-handed alpha
Helix 26	26	E	220	224	Right-handed 310
Helix 27	27	E	233	244	Right-handed alpha
Helix 28	28	E	260	270	Right-handed alpha
Helix 29	29	E	281	296	Right-handed alpha
Helix 30	30	E	328	340	Right-handed alpha
Helix 31	31	E	352	366	Right-handed alpha
Helix 32	32	F	220	224	Right-handed 310
Helix 33	33	F	233	244	Right-handed alpha
Helix 34	34	F	260	270	Right-handed alpha
Helix 35	35	F	281	295	Right-handed alpha
Helix 36	36	F	328	340	Right-handed alpha
Helix 37	37	F	352	366	Right-handed alpha
Helix 38	38	G	220	224	Right-handed 310
Helix 39	39	G	233	244	Right-handed alpha
Helix 40	40	G	260	270	Right-handed alpha
Helix 41	41	G	281	296	Right-handed alpha
Helix 42	42	G	328	340	Right-handed alpha
Helix 43	43	G	352	366	Right-handed alpha
Helix 44	44	H	220	224	Right-handed 310
Helix 45	45	H	233	244	Right-handed alpha
Helix 46	46	H	260	270	Right-handed alpha
Helix 47	47	H	281	295	Right-handed alpha
Helix 48	48	H	328	340	Right-handed alpha
Helix 49	49	H	352	366	Right-handed alpha

There are 8 sheets in PDB entry 3E05. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	304	first strand
Strand 2	A	274	279	parallel
Strand 3	A	251	255	parallel
Strand 4	A	319	322	parallel
Strand 5	A	345	350	parallel
Strand 6	A	395	401	anti-parallel
Strand 7	A	369	380	anti-parallel
Strand 8	D	369	381	anti-parallel
Strand 9	D	395	401	anti-parallel
Strand 10	D	345	350	anti-parallel
Strand 11	D	319	322	parallel
Strand 12	D	251	255	parallel
Strand 13	D	274	279	parallel
Strand 14	D	300	304	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	369	380	anti-parallel
Strand 3	D	369	381	anti-parallel
Strand 4	D	388	391	anti-parallel

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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	304	first strand
Strand 2	B	274	279	parallel
Strand 3	B	251	255	parallel
Strand 4	B	319	322	parallel
Strand 5	B	345	350	parallel
Strand 6	B	395	401	anti-parallel
Strand 7	B	369	379	anti-parallel
Strand 8	C	369	379	anti-parallel
Strand 9	C	395	401	anti-parallel
Strand 10	C	345	350	anti-parallel
Strand 11	C	319	322	parallel
Strand 12	C	251	255	parallel
Strand 13	C	274	279	parallel
Strand 14	C	300	304	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	391	first strand
Strand 2	B	369	379	anti-parallel
Strand 3	C	369	379	anti-parallel
Strand 4	C	390	391	anti-parallel

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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	304	first strand
Strand 2	E	274	279	parallel
Strand 3	E	251	255	parallel
Strand 4	E	319	322	parallel
Strand 5	E	345	350	parallel
Strand 6	E	395	401	anti-parallel
Strand 7	E	369	379	anti-parallel
Strand 8	G	369	379	anti-parallel
Strand 9	G	395	401	anti-parallel
Strand 10	G	345	350	anti-parallel
Strand 11	G	319	322	parallel
Strand 12	G	251	255	parallel
Strand 13	G	274	279	parallel
Strand 14	G	300	304	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	E	369	379	anti-parallel
Strand 3	G	369	379	anti-parallel
Strand 4	G	390	391	anti-parallel

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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	304	first strand
Strand 2	F	274	279	parallel
Strand 3	F	251	255	parallel
Strand 4	F	319	322	parallel
Strand 5	F	345	350	parallel
Strand 6	F	395	401	anti-parallel
Strand 7	F	369	379	anti-parallel
Strand 8	H	369	379	anti-parallel
Strand 9	H	395	401	anti-parallel
Strand 10	H	345	350	anti-parallel
Strand 11	H	319	322	parallel
Strand 12	H	251	255	parallel
Strand 13	H	274	279	parallel
Strand 14	H	300	304	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	390	391	first strand
Strand 2	F	369	379	anti-parallel
Strand 3	H	369	379	anti-parallel
Strand 4	H	390	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3E05

Analysis of interatomic Contacts of Structural Units in PDB entry:
3E05