Analysis of interatomic Contacts of Structural Units in PDB entry:
3E0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3E0J entry

There are 8 chains in PDB entry 3E0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -3	LEU 465
B	ALA 2	ALA 144
C	HIS -3	GLU 458
D	ALA 2	ALA 144
E	HIS -3	GLU 458
F	ALA 2	ALA 144
G	HIS -3	GLU 458
H	ALA 2	ALA 144

There are 65 helices in PDB entry 3E0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	8	Right-handed alpha
Helix 2	2	A	36	40	Right-handed 310
Helix 3	3	A	54	73	Right-handed alpha
Helix 4	4	A	208	224	Right-handed alpha
Helix 5	5	A	228	236	Right-handed alpha
Helix 6	6	A	264	288	Right-handed alpha
Helix 7	7	A	316	321	Right-handed alpha
Helix 8	8	A	346	356	Right-handed alpha
Helix 9	9	A	360	371	Right-handed alpha
Helix 10	10	A	430	435	Right-handed alpha
Helix 11	11	B	2	15	Right-handed alpha
Helix 12	12	B	23	31	Right-handed alpha
Helix 13	13	B	33	53	Right-handed alpha
Helix 14	14	B	84	92	Right-handed alpha
Helix 15	15	B	112	126	Right-handed alpha
Helix 16	16	B	128	132	Right-handed 310
Helix 17	17	C	1	8	Right-handed alpha
Helix 18	18	C	36	40	Right-handed 310
Helix 19	19	C	54	73	Right-handed alpha
Helix 20	20	C	208	223	Right-handed alpha
Helix 21	21	C	228	236	Right-handed alpha
Helix 22	22	C	264	288	Right-handed alpha
Helix 23	23	C	316	321	Right-handed alpha
Helix 24	24	C	346	356	Right-handed alpha
Helix 25	25	C	360	371	Right-handed alpha
Helix 26	26	C	430	435	Right-handed alpha
Helix 27	27	D	2	15	Right-handed alpha
Helix 28	28	D	23	31	Right-handed alpha
Helix 29	29	D	33	53	Right-handed alpha
Helix 30	30	D	84	92	Right-handed alpha
Helix 31	31	D	112	126	Right-handed alpha
Helix 32	32	D	127	132	Right-handed 310
Helix 33	33	E	1	8	Right-handed alpha
Helix 34	34	E	36	40	Right-handed 310
Helix 35	35	E	54	74	Right-handed alpha
Helix 36	36	E	208	224	Right-handed alpha
Helix 37	37	E	228	236	Right-handed alpha
Helix 38	38	E	264	290	Right-handed alpha
Helix 39	39	E	316	321	Right-handed alpha
Helix 40	40	E	346	356	Right-handed alpha
Helix 41	41	E	360	371	Right-handed alpha
Helix 42	42	E	430	435	Right-handed alpha
Helix 43	43	F	2	15	Right-handed alpha
Helix 44	44	F	23	31	Right-handed alpha
Helix 45	45	F	33	53	Right-handed alpha
Helix 46	46	F	84	92	Right-handed alpha
Helix 47	47	F	112	126	Right-handed alpha
Helix 48	48	F	128	132	Right-handed 310
Helix 49	49	G	1	8	Right-handed alpha
Helix 50	50	G	36	40	Right-handed 310
Helix 51	51	G	54	74	Right-handed alpha
Helix 52	52	G	208	224	Right-handed alpha
Helix 53	53	G	228	236	Right-handed alpha
Helix 54	54	G	264	290	Right-handed alpha
Helix 55	55	G	312	315	Right-handed 310
Helix 56	56	G	316	321	Right-handed alpha
Helix 57	57	G	346	356	Right-handed alpha
Helix 58	58	G	360	371	Right-handed alpha
Helix 59	59	G	430	435	Right-handed alpha
Helix 60	60	H	2	15	Right-handed alpha
Helix 61	61	H	23	31	Right-handed alpha
Helix 62	62	H	33	53	Right-handed alpha
Helix 63	63	H	84	92	Right-handed alpha
Helix 64	64	H	112	126	Right-handed alpha
Helix 65	65	H	128	132	Right-handed 310

There are 16 sheets in PDB entry 3E0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	B	135	136	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	339	343	anti-parallel
Strand 4	A	401	407	parallel
Strand 5	A	422	429	parallel
Strand 6	A	411	416	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	100	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	171	177	parallel
Strand 5	A	158	165	anti-parallel
Strand 6	A	91	100	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	292	295	parallel
Strand 3	A	238	244	parallel
Strand 4	A	195	199	parallel
Strand 5	A	436	441	anti-parallel
Strand 6	A	449	454	anti-parallel
Strand 7	B	73	81	parallel
Strand 8	B	58	68	anti-parallel
Strand 9	B	94	104	anti-parallel
Strand 10	B	21	22	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	D	135	136	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	339	343	anti-parallel
Strand 4	C	401	407	parallel
Strand 5	C	422	429	parallel
Strand 6	C	411	416	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	100	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	141	146	anti-parallel
Strand 4	C	171	177	parallel
Strand 5	C	158	165	anti-parallel
Strand 6	C	91	100	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	292	295	parallel
Strand 3	C	238	244	parallel
Strand 4	C	195	199	parallel
Strand 5	C	436	441	anti-parallel
Strand 6	C	447	454	anti-parallel
Strand 7	D	73	81	parallel
Strand 8	D	58	68	anti-parallel
Strand 9	D	95	104	anti-parallel
Strand 10	D	21	22	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	F	135	136	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	332	336	anti-parallel
Strand 3	E	339	343	anti-parallel
Strand 4	E	401	407	parallel
Strand 5	E	422	429	parallel
Strand 6	E	411	416	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	100	first strand
Strand 2	E	132	136	anti-parallel
Strand 3	E	141	146	anti-parallel
Strand 4	E	171	177	parallel
Strand 5	E	158	165	anti-parallel
Strand 6	E	91	100	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	327	first strand
Strand 2	E	292	295	parallel
Strand 3	E	238	244	parallel
Strand 4	E	195	199	parallel
Strand 5	E	436	441	anti-parallel
Strand 6	E	446	454	anti-parallel
Strand 7	F	73	81	parallel
Strand 8	F	58	68	anti-parallel
Strand 9	F	95	104	anti-parallel
Strand 10	F	21	22	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	25	first strand
Strand 2	H	135	136	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	332	336	anti-parallel
Strand 3	G	339	343	anti-parallel
Strand 4	G	401	407	parallel
Strand 5	G	422	429	parallel
Strand 6	G	411	416	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	100	first strand
Strand 2	G	132	136	anti-parallel
Strand 3	G	141	146	anti-parallel
Strand 4	G	171	177	parallel
Strand 5	G	158	165	anti-parallel
Strand 6	G	91	100	anti-parallel

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There are 10 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	327	first strand
Strand 2	G	292	295	parallel
Strand 3	G	238	244	parallel
Strand 4	G	195	199	parallel
Strand 5	G	436	441	anti-parallel
Strand 6	G	446	454	anti-parallel
Strand 7	H	73	81	parallel
Strand 8	H	58	68	anti-parallel
Strand 9	H	95	104	anti-parallel
Strand 10	H	21	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3E0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3E0J