Analysis of interatomic Contacts of Structural Units in PDB entry:
3E0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E0M entry

There are 7 chains in PDB entry 3E0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 312
B
 MET 1LYS 312
C
 HIS 0LYS 312
D
 HIS 0LYS 312
E
 SER -1ILE 4
F
 SER -1ALA 2
G
 SER -1ALA 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3E0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
63 75Right-handed alpha
Helix 4
4
A
89 92Right-handed 310
Helix 5
5
A
99 101Right-handed 310
Helix 6
6
A
102 118Right-handed alpha
Helix 7
7
A
135 139Right-handed 310
Helix 8
8
A
140 145Right-handed alpha
Helix 9
9
A
153 158Right-handed 310
Helix 10
10
A
163 168Right-handed 310
Helix 11
11
A
171 179Right-handed alpha
Helix 12
12
A
180 190Right-handed alpha
Helix 13
13
A
222 224Right-handed 310
Helix 14
14
A
239 241Right-handed 310
Helix 15
15
A
295 302Right-handed alpha
Helix 16
16
A
303 310Right-handed 310
Helix 17
17
B
10 20Right-handed alpha
Helix 18
18
B
43 48Right-handed alpha
Helix 19
19
B
63 75Right-handed alpha
Helix 20
20
B
89 92Right-handed 310
Helix 21
21
B
99 101Right-handed 310
Helix 22
22
B
102 118Right-handed alpha
Helix 23
23
B
153 159Right-handed 310
Helix 24
24
B
163 168Right-handed 310
Helix 25
25
B
171 179Right-handed alpha
Helix 26
26
B
180 189Right-handed alpha
Helix 27
27
B
239 241Right-handed 310
Helix 28
28
B
275 279Right-handed 310
Helix 29
29
B
295 301Right-handed alpha
Helix 30
30
B
303 310Right-handed 310
Helix 31
31
C
10 20Right-handed alpha
Helix 32
32
C
43 48Right-handed alpha
Helix 33
33
C
63 75Right-handed alpha
Helix 34
34
C
89 92Right-handed 310
Helix 35
35
C
99 101Right-handed 310
Helix 36
36
C
102 118Right-handed alpha
Helix 37
37
C
140 145Right-handed alpha
Helix 38
38
C
153 159Right-handed 310
Helix 39
39
C
163 168Right-handed 310
Helix 40
40
C
171 179Right-handed alpha
Helix 41
41
C
180 190Right-handed alpha
Helix 42
42
C
240 242Right-handed 310
Helix 43
43
C
296 298Right-handed 310
Helix 44
44
C
303 307Right-handed 310
Helix 45
45
D
10 20Right-handed alpha
Helix 46
46
D
43 48Right-handed alpha
Helix 47
47
D
63 73Right-handed alpha
Helix 48
48
D
89 92Right-handed 310
Helix 49
49
D
99 101Right-handed 310
Helix 50
50
D
102 116Right-handed alpha
Helix 51
51
D
140 144Right-handed 310
Helix 52
52
D
153 157Right-handed 310
Helix 53
53
D
163 168Right-handed 310
Helix 54
54
D
171 179Right-handed alpha
Helix 55
55
D
180 190Right-handed alpha
Helix 56
56
D
222 224Right-handed 310
Helix 57
57
D
240 242Right-handed 310
Helix 58
58
D
275 279Right-handed 310
Helix 59
59
D
303 307Right-handed 310
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There are 16 sheets in PDB entry 3E0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
94 97parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
50 57anti-parallel
Strand 5
A
24 32anti-parallel
Strand 6
A
131 133anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
86 87anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
290 294anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
282 285anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
255 260anti-parallel
Strand 5
A
243 248anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
94 97parallel
Strand 3
B
2 7anti-parallel
Strand 4
B
50 57anti-parallel
Strand 5
B
24 32anti-parallel
Strand 6
B
131 133anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
86 87anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
207 211anti-parallel
Strand 3
B
290 294anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
233 234anti-parallel
Strand 3
B
282 285anti-parallel
Strand 4
B
266 271anti-parallel
Strand 5
B
255 260anti-parallel
Strand 6
B
243 248anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 127first strand
Strand 2
C
94 97parallel
Strand 3
C
1 7anti-parallel
Strand 4
C
50 58anti-parallel
Strand 5
C
24 32anti-parallel
Strand 6
C
131 133anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
86 87anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
207 211anti-parallel
Strand 3
C
290 294anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 225first strand
Strand 2
C
233 234anti-parallel
Strand 3
C
282 285anti-parallel
Strand 4
C
266 271anti-parallel
Strand 5
C
254 260anti-parallel
Strand 6
C
244 250anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 127first strand
Strand 2
D
94 97parallel
Strand 3
D
1 7anti-parallel
Strand 4
D
50 58anti-parallel
Strand 5
D
24 32anti-parallel
Strand 6
D
131 133anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 83first strand
Strand 2
D
86 87anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 220first strand
Strand 2
D
207 211anti-parallel
Strand 3
D
290 294anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 234first strand
Strand 2
D
282 285anti-parallel
Strand 3
D
266 271anti-parallel
Strand 4
D
255 260anti-parallel
Strand 5
D
244 249anti-parallel
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