Analysis of interatomic Contacts of Structural Units in PDB entry:
3E10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E10 entry

There are 2 chains in PDB entry 3E10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2TYR 167
B
 MSE 1TYR 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3E10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
19 32Right-handed alpha
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
49 57Right-handed alpha
Helix 5
5
A
58 60Right-handed 310
Helix 6
6
A
63 69Right-handed 310
Helix 7
7
A
80 82Right-handed 310
Helix 8
8
A
84 86Right-handed 310
Helix 9
9
A
87 106Right-handed alpha
Helix 10
10
A
118 129Right-handed alpha
Helix 11
11
A
158 160Right-handed 310
Helix 12
12
B
2 7Right-handed alpha
Helix 13
13
B
19 32Right-handed alpha
Helix 14
14
B
35 39Right-handed 310
Helix 15
15
B
49 57Right-handed alpha
Helix 16
16
B
58 60Right-handed 310
Helix 17
17
B
63 68Right-handed 310
Helix 18
18
B
80 82Right-handed 310
Helix 19
19
B
84 86Right-handed 310
Helix 20
20
B
87 106Right-handed alpha
Helix 21
21
B
118 129Right-handed alpha
Helix 22
22
B
158 160Right-handed 310
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There are 2 sheets in PDB entry 3E10. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
135 144anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
42 47anti-parallel
Strand 5
B
162 164parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
B
42 47parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
135 144anti-parallel
Strand 5
B
109 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il