Analysis of interatomic Contacts of Structural Units in PDB entry:
3E12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E12 entry

There are 2 chains in PDB entry 3E12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 264
B
 LYS 3ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3E12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
59 75Right-handed alpha
Helix 3
3
A
84 86Right-handed 310
Helix 4
4
A
87 93Right-handed alpha
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
107 116Right-handed alpha
Helix 7
7
A
130 133Right-handed 310
Helix 8
8
A
134 144Right-handed alpha
Helix 9
9
A
168 174Right-handed alpha
Helix 10
10
A
184 188Right-handed 310
Helix 11
11
A
200 202Right-handed 310
Helix 12
12
A
203 215Right-handed alpha
Helix 13
13
A
226 230Right-handed 310
Helix 14
14
A
242 259Right-handed alpha
Helix 15
15
B
15 33Right-handed alpha
Helix 16
16
B
59 75Right-handed alpha
Helix 17
17
B
84 86Right-handed 310
Helix 18
18
B
87 93Right-handed alpha
Helix 19
19
B
101 105Right-handed 310
Helix 20
20
B
107 117Right-handed alpha
Helix 21
21
B
130 133Right-handed 310
Helix 22
22
B
134 144Right-handed alpha
Helix 23
23
B
168 174Right-handed alpha
Helix 24
24
B
200 202Right-handed 310
Helix 25
25
B
203 215Right-handed alpha
Helix 26
26
B
226 230Right-handed 310
Helix 27
27
B
242 258Right-handed alpha
Helix 28
28
B
259 261Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3E12. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
218 224parallel
Strand 3
A
178 182parallel
Strand 4
A
149 153parallel
Strand 5
A
120 124parallel
Strand 6
A
97 100parallel
Strand 7
A
77 81parallel
Strand 8
A
36 41parallel
Strand 9
A
4 9parallel
Strand 10
A
218 224parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
218 224parallel
Strand 3
B
178 182parallel
Strand 4
B
149 153parallel
Strand 5
B
120 124parallel
Strand 6
B
97 100parallel
Strand 7
B
77 81parallel
Strand 8
B
36 41parallel
Strand 9
B
4 9parallel
Strand 10
B
218 224parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
163 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il