Analysis of interatomic Contacts of Structural Units in PDB entry:
3E15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3E15 entry

There are 4 chains in PDB entry 3E15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	TYR 297
B	MSE 1	VAL 298
C	MSE 1	VAL 298
D	MSE 1	TYR 297

There are 62 helices in PDB entry 3E15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	49	Right-handed alpha
Helix 2	2	A	61	72	Right-handed alpha
Helix 3	3	A	80	84	Right-handed 310
Helix 4	4	A	101	113	Right-handed alpha
Helix 5	5	A	116	120	Right-handed alpha
Helix 6	6	A	129	149	Right-handed alpha
Helix 7	7	A	170	180	Right-handed alpha
Helix 8	8	A	181	184	Right-handed 310
Helix 9	9	A	187	191	Right-handed 310
Helix 10	10	A	200	206	Right-handed alpha
Helix 11	11	A	229	235	Right-handed alpha
Helix 12	12	A	245	259	Right-handed alpha
Helix 13	13	A	268	276	Right-handed alpha
Helix 14	14	A	288	295	Right-handed alpha
Helix 15	15	B	2	12	Right-handed alpha
Helix 16	16	B	26	49	Right-handed alpha
Helix 17	17	B	50	53	Right-handed 310
Helix 18	18	B	61	72	Right-handed alpha
Helix 19	19	B	80	84	Right-handed 310
Helix 20	20	B	101	113	Right-handed alpha
Helix 21	21	B	116	120	Right-handed alpha
Helix 22	22	B	129	149	Right-handed alpha
Helix 23	23	B	170	180	Right-handed alpha
Helix 24	24	B	181	184	Right-handed 310
Helix 25	25	B	187	191	Right-handed 310
Helix 26	26	B	200	206	Right-handed alpha
Helix 27	27	B	229	235	Right-handed alpha
Helix 28	28	B	245	260	Right-handed alpha
Helix 29	29	B	268	276	Right-handed alpha
Helix 30	30	B	288	298	Right-handed alpha
Helix 31	31	C	2	11	Right-handed alpha
Helix 32	32	C	26	49	Right-handed alpha
Helix 33	33	C	50	53	Right-handed 310
Helix 34	34	C	61	72	Right-handed alpha
Helix 35	35	C	80	84	Right-handed 310
Helix 36	36	C	101	113	Right-handed alpha
Helix 37	37	C	116	120	Right-handed alpha
Helix 38	38	C	129	149	Right-handed alpha
Helix 39	39	C	170	180	Right-handed alpha
Helix 40	40	C	181	184	Right-handed 310
Helix 41	41	C	187	191	Right-handed 310
Helix 42	42	C	200	206	Right-handed alpha
Helix 43	43	C	229	235	Right-handed alpha
Helix 44	44	C	245	259	Right-handed alpha
Helix 45	45	C	268	276	Right-handed alpha
Helix 46	46	C	288	298	Right-handed alpha
Helix 47	47	D	2	12	Right-handed alpha
Helix 48	48	D	26	49	Right-handed alpha
Helix 49	49	D	61	72	Right-handed alpha
Helix 50	50	D	80	82	Right-handed 310
Helix 51	51	D	101	113	Right-handed alpha
Helix 52	52	D	116	120	Right-handed alpha
Helix 53	53	D	129	149	Right-handed alpha
Helix 54	54	D	170	180	Right-handed alpha
Helix 55	55	D	181	184	Right-handed 310
Helix 56	56	D	187	191	Right-handed 310
Helix 57	57	D	200	206	Right-handed alpha
Helix 58	58	D	229	235	Right-handed alpha
Helix 59	59	D	245	259	Right-handed alpha
Helix 60	60	D	268	276	Right-handed alpha
Helix 61	61	D	288	294	Right-handed alpha
Helix 62	62	D	295	297	Right-handed 310

There are 8 sheets in PDB entry 3E15. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	279	284	parallel
Strand 4	A	238	243	parallel
Strand 5	A	153	156	parallel
Strand 6	A	55	58	parallel
Strand 7	A	85	88	parallel
Strand 8	A	121	122	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	212	216	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	279	283	parallel
Strand 4	B	238	243	parallel
Strand 5	B	153	156	parallel
Strand 6	B	55	58	parallel
Strand 7	B	85	88	parallel
Strand 8	B	121	122	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	212	216	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	279	283	parallel
Strand 4	C	238	243	parallel
Strand 5	C	153	156	parallel
Strand 6	C	55	58	parallel
Strand 7	C	85	88	parallel
Strand 8	C	121	122	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	224	228	anti-parallel
Strand 3	C	212	216	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	279	283	parallel
Strand 4	D	238	243	parallel
Strand 5	D	153	156	parallel
Strand 6	D	54	58	parallel
Strand 7	D	84	88	parallel
Strand 8	D	121	122	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	224	228	anti-parallel
Strand 3	D	212	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3E15

Analysis of interatomic Contacts of Structural Units in PDB entry:
3E15