Analysis of interatomic Contacts of Structural Units in PDB entry:
3E2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E2D entry

There are 2 chains in PDB entry 3E2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1ASN 502
B
ALA 1ASN 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3E2D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
39 48Right-handed alpha
Helix 3
3
A
64 75Right-handed alpha
Helix 4
4
A
94 102Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
131 143Right-handed alpha
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
157 163Right-handed 310
Helix 9
9
A
164 174Right-handed alpha
Helix 10
10
A
189 197Right-handed alpha
Helix 11
11
A
204 211Right-handed alpha
Helix 12
12
A
227 235Right-handed alpha
Helix 13
13
A
244 257Right-handed alpha
Helix 14
14
A
271 278Right-handed alpha
Helix 15
15
A
280 303Right-handed alpha
Helix 16
16
A
338 342Right-handed 310
Helix 17
17
A
355 363Right-handed alpha
Helix 18
18
A
367 377Right-handed alpha
Helix 19
19
A
379 383Right-handed 310
Helix 20
20
A
384 396Right-handed alpha
Helix 21
21
A
401 410Right-handed alpha
Helix 22
22
A
435 439Right-handed 310
Helix 23
23
A
444 457Right-handed alpha
Helix 24
24
A
477 482Right-handed alpha
Helix 25
25
A
483 485Right-handed 310
Helix 26
26
A
490 500Right-handed alpha
Helix 27
27
B
15 29Right-handed alpha
Helix 28
28
B
39 48Right-handed alpha
Helix 29
29
B
64 75Right-handed alpha
Helix 30
30
B
94 102Right-handed alpha
Helix 31
31
B
116 121Right-handed alpha
Helix 32
32
B
131 143Right-handed alpha
Helix 33
33
B
151 155Right-handed 310
Helix 34
34
B
157 163Right-handed 310
Helix 35
35
B
164 174Right-handed alpha
Helix 36
36
B
189 197Right-handed alpha
Helix 37
37
B
204 211Right-handed alpha
Helix 38
38
B
227 238Right-handed alpha
Helix 39
39
B
244 257Right-handed alpha
Helix 40
40
B
271 278Right-handed alpha
Helix 41
41
B
280 303Right-handed alpha
Helix 42
42
B
338 342Right-handed 310
Helix 43
43
B
355 363Right-handed alpha
Helix 44
44
B
367 377Right-handed alpha
Helix 45
45
B
378 383Right-handed 310
Helix 46
46
B
384 396Right-handed alpha
Helix 47
47
B
401 410Right-handed alpha
Helix 48
48
B
435 439Right-handed 310
Helix 49
49
B
444 457Right-handed alpha
Helix 50
50
B
477 482Right-handed alpha
Helix 51
51
B
483 485Right-handed 310
Helix 52
52
B
490 500Right-handed alpha
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There are 8 sheets in PDB entry 3E2D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
200 202first strand
Strand 2
A
216 219parallel
Strand 3
A
146 150parallel
Strand 4
A
105 113parallel
Strand 5
A
263 269parallel
Strand 6
A
5 13parallel
Strand 7
A
308 318parallel
Strand 8
A
465 466anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
200 202first strand
Strand 2
A
216 219parallel
Strand 3
A
146 150parallel
Strand 4
A
105 113parallel
Strand 5
A
263 269parallel
Strand 6
A
5 13parallel
Strand 7
A
308 318parallel
Strand 8
A
470 475anti-parallel
Strand 9
A
49 54anti-parallel
Strand 10
A
487 489parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
322 323first strand
Strand 2
A
458 459anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
411 413first strand
Strand 2
A
428 430anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
200 202first strand
Strand 2
B
216 219parallel
Strand 3
B
146 150parallel
Strand 4
B
105 113parallel
Strand 5
B
263 269parallel
Strand 6
B
5 13parallel
Strand 7
B
308 318parallel
Strand 8
B
465 466anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
200 202first strand
Strand 2
B
216 219parallel
Strand 3
B
146 150parallel
Strand 4
B
105 113parallel
Strand 5
B
263 269parallel
Strand 6
B
5 13parallel
Strand 7
B
308 318parallel
Strand 8
B
470 475anti-parallel
Strand 9
B
49 54anti-parallel
Strand 10
B
487 489parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
322 323first strand
Strand 2
B
458 459anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
411 413first strand
Strand 2
B
428 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il