Analysis of interatomic Contacts of Structural Units in PDB entry:
3E2E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E2E entry

There are 4 chains in PDB entry 3E2E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8ALA 883
R
 G 1 G 7
T
 A 1 A 33
N
 T 101 T 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3E2E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 52Right-handed alpha
Helix 2
2
A
73 95Right-handed alpha
Helix 3
3
A
100 106Right-handed alpha
Helix 4
4
A
110 129Right-handed alpha
Helix 5
5
A
133 160Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
205 221Right-handed alpha
Helix 8
8
A
247 252Right-handed alpha
Helix 9
9
A
301 307Right-handed alpha
Helix 10
10
A
313 325Right-handed alpha
Helix 11
11
A
331 342Right-handed alpha
Helix 12
12
A
370 374Right-handed 310
Helix 13
13
A
377 408Right-handed alpha
Helix 14
14
A
437 443Right-handed alpha
Helix 15
15
A
454 468Right-handed alpha
Helix 16
16
A
474 485Right-handed alpha
Helix 17
17
A
487 495Right-handed alpha
Helix 18
18
A
501 505Right-handed 310
Helix 19
19
A
507 525Right-handed alpha
Helix 20
20
A
540 550Right-handed alpha
Helix 21
21
A
569 588Right-handed alpha
Helix 22
22
A
612 622Right-handed alpha
Helix 23
23
A
626 638Right-handed alpha
Helix 24
24
A
642 654Right-handed alpha
Helix 25
25
A
654 661Right-handed alpha
Helix 26
26
A
669 687Right-handed alpha
Helix 27
27
A
689 708Right-handed alpha
Helix 28
28
A
752 754Right-handed 310
Helix 29
29
A
770 801Right-handed alpha
Helix 30
30
A
817 839Right-handed alpha
Helix 31
31
A
840 850Right-handed alpha
Helix 32
32
A
871 878Right-handed 310
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There are 8 sheets in PDB entry 3E2E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 232first strand
Strand 2
A
241 246anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
418 421parallel
Strand 3
A
426 428anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
444 446anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 537first strand
Strand 2
A
813 816anti-parallel
Strand 3
A
808 809anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
609 610anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 728first strand
Strand 2
A
734 737anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 746first strand
Strand 2
A
760 762anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 751first strand
Strand 2
A
755 757anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il