Analysis of interatomic Contacts of Structural Units in PDB entry:
3E2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E2F entry

There are 4 chains in PDB entry 3E2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 42GLY 280
A
 THR 282ASN 451
B
 ASN 42GLY 280
B
 THR 282ASN 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3E2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 47Right-handed 310
Helix 2
2
A
52 61Right-handed alpha
Helix 3
3
A
79 91Right-handed alpha
Helix 4
4
A
92 97Right-handed 310
Helix 5
5
A
104 120Right-handed alpha
Helix 6
6
A
133 147Right-handed alpha
Helix 7
7
A
162 170Right-handed alpha
Helix 8
8
A
190 192Right-handed 310
Helix 9
9
A
197 203Right-handed alpha
Helix 10
10
A
226 240Right-handed alpha
Helix 11
11
A
262 266Right-handed 310
Helix 12
12
A
269 271Right-handed 310
Helix 13
13
A
279 284Right-handed alpha
Helix 14
14
A
285 289Right-handed 310
Helix 15
15
A
296 309Right-handed alpha
Helix 16
16
A
315 331Right-handed alpha
Helix 17
17
A
338 360Right-handed alpha
Helix 18
18
A
393 407Right-handed alpha
Helix 19
19
A
414 417Right-handed 310
Helix 20
20
A
418 420Right-handed 310
Helix 21
21
A
421 426Right-handed alpha
Helix 22
22
A
436 449Right-handed alpha
Helix 23
23
B
43 47Right-handed 310
Helix 24
24
B
52 62Right-handed alpha
Helix 25
25
B
79 92Right-handed alpha
Helix 26
26
B
93 97Right-handed 310
Helix 27
27
B
104 120Right-handed alpha
Helix 28
28
B
134 147Right-handed alpha
Helix 29
29
B
162 170Right-handed alpha
Helix 30
30
B
190 192Right-handed 310
Helix 31
31
B
197 204Right-handed alpha
Helix 32
32
B
226 241Right-handed alpha
Helix 33
33
B
262 266Right-handed 310
Helix 34
34
B
279 284Right-handed alpha
Helix 35
35
B
285 288Right-handed 310
Helix 36
36
B
296 309Right-handed alpha
Helix 37
37
B
315 331Right-handed alpha
Helix 38
38
B
338 361Right-handed alpha
Helix 39
39
B
393 407Right-handed alpha
Helix 40
40
B
414 417Right-handed 310
Helix 41
41
B
421 425Right-handed 310
Helix 42
42
B
436 449Right-handed alpha
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There are 8 sheets in PDB entry 3E2F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
408 409parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
273 278anti-parallel
Strand 4
A
243 247parallel
Strand 5
A
209 215parallel
Strand 6
A
152 157parallel
Strand 7
A
173 178parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
194 195anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
428 432anti-parallel
Strand 4
A
411 412anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
408 409parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
290 294anti-parallel
Strand 3
B
273 278anti-parallel
Strand 4
B
243 247parallel
Strand 5
B
209 215parallel
Strand 6
B
152 157parallel
Strand 7
B
173 178parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
194 195anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
373 377anti-parallel
Strand 3
B
428 432anti-parallel
Strand 4
B
411 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il