Analysis of interatomic Contacts of Structural Units in PDB entry:
3E2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E2J entry

There are 4 chains in PDB entry 3E2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1LYS 175
B
 PHE 1LYS 175
C
 PHE 1LYS 175
D
 PHE 1LYS 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3E2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 10Right-handed alpha
Helix 2
2
A
13 21Right-handed alpha
Helix 3
3
A
21 33Right-handed alpha
Helix 4
4
A
48 52Right-handed 310
Helix 5
5
A
73 81Right-handed 310
Helix 6
6
A
98 106Right-handed alpha
Helix 7
7
A
108 115Right-handed alpha
Helix 8
8
A
127 133Right-handed alpha
Helix 9
9
A
134 137Right-handed 310
Helix 10
10
A
153 165Right-handed alpha
Helix 11
11
B
4 10Right-handed alpha
Helix 12
12
B
13 33Right-handed alpha
Helix 13
13
B
48 52Right-handed 310
Helix 14
14
B
73 81Right-handed 310
Helix 15
15
B
98 107Right-handed alpha
Helix 16
16
B
108 115Right-handed alpha
Helix 17
17
B
127 133Right-handed alpha
Helix 18
18
B
134 137Right-handed 310
Helix 19
19
B
153 165Right-handed alpha
Helix 20
20
C
3 10Right-handed alpha
Helix 21
21
C
13 33Right-handed alpha
Helix 22
22
C
73 76Right-handed 310
Helix 23
23
C
77 82Right-handed alpha
Helix 24
24
C
98 107Right-handed alpha
Helix 25
25
C
108 115Right-handed alpha
Helix 26
26
C
127 133Right-handed alpha
Helix 27
27
C
134 137Right-handed 310
Helix 28
28
C
153 165Right-handed alpha
Helix 29
29
D
4 11Right-handed alpha
Helix 30
30
D
13 21Right-handed alpha
Helix 31
31
D
21 33Right-handed alpha
Helix 32
32
D
48 52Right-handed 310
Helix 33
33
D
73 81Right-handed 310
Helix 34
34
D
98 107Right-handed alpha
Helix 35
35
D
108 115Right-handed alpha
Helix 36
36
D
127 133Right-handed alpha
Helix 37
37
D
134 137Right-handed 310
Helix 38
38
D
153 165Right-handed alpha
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There are 4 sheets in PDB entry 3E2J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
88 92parallel
Strand 4
A
117 121parallel
Strand 5
A
142 146parallel
Strand 6
A
172 173parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
88 92parallel
Strand 4
B
117 121parallel
Strand 5
B
142 146parallel
Strand 6
B
172 173parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 39first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
88 92parallel
Strand 4
C
117 121parallel
Strand 5
C
142 146parallel
Strand 6
C
172 173parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
64 68anti-parallel
Strand 3
D
88 92parallel
Strand 4
D
117 121parallel
Strand 5
D
142 146parallel
Strand 6
D
172 173parallel
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