Analysis of interatomic Contacts of Structural Units in PDB entry:
3E3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E3B entry

There is 1 chain in PDB entry 3E3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1GLN 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3E3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
21 26Right-handed alpha
Helix 2
2
X
61 63Right-handed 310
Helix 3
3
X
75 88Right-handed alpha
Helix 4
4
X
121 126Right-handed alpha
Helix 5
5
X
131 151Right-handed alpha
Helix 6
6
X
159 161Right-handed 310
Helix 7
7
X
200 204Right-handed 310
Helix 8
8
X
212 229Right-handed alpha
Helix 9
9
X
240 251Right-handed alpha
Helix 10
10
X
251 262Right-handed alpha
Helix 11
11
X
269 274Right-handed alpha
Helix 12
12
X
281 286Right-handed 310
Helix 13
13
X
287 291Right-handed 310
Helix 14
14
X
295 306Right-handed alpha
Helix 15
15
X
315 321Right-handed alpha
Helix 16
16
X
322 326Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3E3B. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
40 48first strand
Strand 2
X
53 59anti-parallel
Strand 3
X
64 70anti-parallel
Strand 4
X
110 114anti-parallel
Strand 5
X
98 103anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
163 166first strand
Strand 2
X
171 174anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il