Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5B entry

There are 4 chains in PDB entry 3E5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLY 407
B
 ASP 3THR 406
C
 THR 2GLY 407
D
 ASP 3GLY 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 3E5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
39 56Right-handed alpha
Helix 4
4
A
66 76Right-handed alpha
Helix 5
5
A
84 92Right-handed alpha
Helix 6
6
A
108 132Right-handed alpha
Helix 7
7
A
154 169Right-handed alpha
Helix 8
8
A
195 214Right-handed alpha
Helix 9
9
A
239 243Right-handed 310
Helix 10
10
A
260 272Right-handed alpha
Helix 11
11
A
273 275Right-handed 310
Helix 12
12
A
286 301Right-handed alpha
Helix 13
13
A
315 320Right-handed alpha
Helix 14
14
A
321 335Right-handed alpha
Helix 15
15
A
344 365Right-handed alpha
Helix 16
16
A
365 380Right-handed alpha
Helix 17
17
A
381 383Right-handed 310
Helix 18
18
A
388 394Right-handed alpha
Helix 19
19
A
394 406Right-handed alpha
Helix 20
20
B
3 8Right-handed alpha
Helix 21
21
B
24 32Right-handed alpha
Helix 22
22
B
39 56Right-handed alpha
Helix 23
23
B
66 76Right-handed alpha
Helix 24
24
B
84 92Right-handed alpha
Helix 25
25
B
108 132Right-handed alpha
Helix 26
26
B
154 169Right-handed alpha
Helix 27
27
B
195 214Right-handed alpha
Helix 28
28
B
239 243Right-handed 310
Helix 29
29
B
260 272Right-handed alpha
Helix 30
30
B
273 275Right-handed 310
Helix 31
31
B
286 301Right-handed alpha
Helix 32
32
B
315 320Right-handed alpha
Helix 33
33
B
321 335Right-handed alpha
Helix 34
34
B
344 365Right-handed alpha
Helix 35
35
B
365 380Right-handed alpha
Helix 36
36
B
381 383Right-handed 310
Helix 37
37
B
388 394Right-handed alpha
Helix 38
38
B
394 406Right-handed alpha
Helix 39
39
C
2 8Right-handed alpha
Helix 40
40
C
24 32Right-handed alpha
Helix 41
41
C
39 54Right-handed alpha
Helix 42
42
C
66 76Right-handed alpha
Helix 43
43
C
84 92Right-handed alpha
Helix 44
44
C
108 132Right-handed alpha
Helix 45
45
C
154 169Right-handed alpha
Helix 46
46
C
195 214Right-handed alpha
Helix 47
47
C
239 243Right-handed 310
Helix 48
48
C
260 272Right-handed alpha
Helix 49
49
C
273 275Right-handed 310
Helix 50
50
C
286 301Right-handed alpha
Helix 51
51
C
315 320Right-handed alpha
Helix 52
52
C
321 336Right-handed alpha
Helix 53
53
C
344 365Right-handed alpha
Helix 54
54
C
365 380Right-handed alpha
Helix 55
55
C
381 383Right-handed 310
Helix 56
56
C
388 394Right-handed alpha
Helix 57
57
C
394 406Right-handed alpha
Helix 58
58
D
3 8Right-handed alpha
Helix 59
59
D
24 32Right-handed alpha
Helix 60
60
D
39 56Right-handed alpha
Helix 61
61
D
66 77Right-handed alpha
Helix 62
62
D
84 92Right-handed alpha
Helix 63
63
D
108 131Right-handed alpha
Helix 64
64
D
154 169Right-handed alpha
Helix 65
65
D
195 214Right-handed alpha
Helix 66
66
D
239 243Right-handed 310
Helix 67
67
D
260 272Right-handed alpha
Helix 68
68
D
273 275Right-handed 310
Helix 69
69
D
286 301Right-handed alpha
Helix 70
70
D
315 320Right-handed alpha
Helix 71
71
D
321 336Right-handed alpha
Helix 72
72
D
344 365Right-handed alpha
Helix 73
73
D
365 380Right-handed alpha
Helix 74
74
D
381 383Right-handed 310
Helix 75
75
D
385 389Right-handed 310
Helix 76
76
D
394 406Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3E5B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
337 342parallel
Strand 3
A
306 309parallel
Strand 4
A
277 280parallel
Strand 5
A
218 223parallel
Strand 6
A
172 176parallel
Strand 7
A
144 147parallel
Strand 8
A
81 83parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
230 231parallel
Strand 3
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
337 342parallel
Strand 3
B
306 309parallel
Strand 4
B
277 280parallel
Strand 5
B
218 223parallel
Strand 6
B
172 176parallel
Strand 7
B
144 147parallel
Strand 8
B
81 83parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
230 231parallel
Strand 3
B
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
80 83parallel
Strand 3
C
144 147parallel
Strand 4
C
172 176parallel
Strand 5
C
218 223parallel
Strand 6
C
277 280parallel
Strand 7
C
306 309parallel
Strand 8
C
337 342parallel
Strand 9
C
59 63parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 193first strand
Strand 2
C
230 231parallel
Strand 3
C
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
337 342parallel
Strand 3
D
306 309parallel
Strand 4
D
277 280parallel
Strand 5
D
218 223parallel
Strand 6
D
172 176parallel
Strand 7
D
144 147parallel
Strand 8
D
81 83parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 193first strand
Strand 2
D
230 231parallel
Strand 3
D
255 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il