Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5P entry

There are 3 chains in PDB entry 3E5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ASN 371
B
 MET 1ASN 371
C
 MET 1ASN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3E5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
39 45Right-handed alpha
Helix 3
3
A
47 58Right-handed alpha
Helix 4
4
A
67 76Right-handed alpha
Helix 5
5
A
90 92Right-handed 310
Helix 6
6
A
93 101Right-handed alpha
Helix 7
7
A
108 120Right-handed alpha
Helix 8
8
A
145 158Right-handed alpha
Helix 9
9
A
178 190Right-handed alpha
Helix 10
10
A
206 213Right-handed alpha
Helix 11
11
A
224 229Right-handed 310
Helix 12
12
A
266 270Right-handed 310
Helix 13
13
A
285 289Right-handed 310
Helix 14
14
A
291 295Right-handed 310
Helix 15
15
A
343 352Right-handed alpha
Helix 16
16
A
354 362Right-handed alpha
Helix 17
17
B
15 27Right-handed alpha
Helix 18
18
B
39 45Right-handed alpha
Helix 19
19
B
47 58Right-handed alpha
Helix 20
20
B
67 77Right-handed alpha
Helix 21
21
B
90 92Right-handed 310
Helix 22
22
B
93 100Right-handed alpha
Helix 23
23
B
108 120Right-handed alpha
Helix 24
24
B
145 157Right-handed alpha
Helix 25
25
B
178 193Right-handed alpha
Helix 26
26
B
206 213Right-handed alpha
Helix 27
27
B
224 229Right-handed 310
Helix 28
28
B
266 270Right-handed 310
Helix 29
29
B
291 295Right-handed 310
Helix 30
30
B
343 352Right-handed alpha
Helix 31
31
B
354 362Right-handed alpha
Helix 32
32
C
15 29Right-handed alpha
Helix 33
33
C
39 45Right-handed alpha
Helix 34
34
C
47 58Right-handed alpha
Helix 35
35
C
67 77Right-handed alpha
Helix 36
36
C
90 92Right-handed 310
Helix 37
37
C
93 100Right-handed alpha
Helix 38
38
C
108 117Right-handed alpha
Helix 39
39
C
145 157Right-handed alpha
Helix 40
40
C
178 193Right-handed alpha
Helix 41
41
C
206 213Right-handed alpha
Helix 42
42
C
224 229Right-handed 310
Helix 43
43
C
266 270Right-handed 310
Helix 44
44
C
285 289Right-handed 310
Helix 45
45
C
291 295Right-handed 310
Helix 46
46
C
343 352Right-handed alpha
Helix 47
47
C
354 362Right-handed alpha
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There are 14 sheets in PDB entry 3E5P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
330 337anti-parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
10 13anti-parallel
Strand 5
A
368 370parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
165 167parallel
Strand 3
A
129 132parallel
Strand 4
A
103 106parallel
Strand 5
A
83 88parallel
Strand 6
A
63 65parallel
Strand 7
A
34 38parallel
Strand 8
A
220 223parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
277 282anti-parallel
Strand 3
A
317 321anti-parallel
Strand 4
A
308 309anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
305 306anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
277 282anti-parallel
Strand 3
B
317 321anti-parallel
Strand 4
B
304 309anti-parallel
Strand 5
B
298 301anti-parallel
Strand 6
B
330 337anti-parallel
Strand 7
B
340 342anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
277 282anti-parallel
Strand 3
B
317 321anti-parallel
Strand 4
B
304 309anti-parallel
Strand 5
B
298 301anti-parallel
Strand 6
B
330 337anti-parallel
Strand 7
B
247 252anti-parallel
Strand 8
B
10 14anti-parallel
Strand 9
B
368 371parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
62 65parallel
Strand 3
B
83 85parallel
Strand 4
B
103 106parallel
Strand 5
B
127 132parallel
Strand 6
B
161 167parallel
Strand 7
B
201 205parallel
Strand 8
B
220 223parallel
Strand 9
B
34 38parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
271 272anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 307first strand
Strand 2
C
298 301anti-parallel
Strand 3
C
330 337anti-parallel
Strand 4
C
340 342anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 307first strand
Strand 2
C
298 301anti-parallel
Strand 3
C
330 337anti-parallel
Strand 4
C
247 252anti-parallel
Strand 5
C
10 14anti-parallel
Strand 6
C
368 371parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 38first strand
Strand 2
C
62 65parallel
Strand 3
C
83 85parallel
Strand 4
C
103 106parallel
Strand 5
C
127 132parallel
Strand 6
C
161 167parallel
Strand 7
C
201 205parallel
Strand 8
C
220 223parallel
Strand 9
C
34 38parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 259first strand
Strand 2
C
277 282anti-parallel
Strand 3
C
317 321anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 265first strand
Strand 2
C
271 272anti-parallel
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