Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5W entry

There are 8 chains in PDB entry 3E5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PHE 62
A
 SER 66LEU 231
B
 SER 3PHE 62
B
 SER 66LEU 231
C
 SER 3PHE 62
C
 SER 66LEU 231
D
 SER 3PHE 62
D
 SER 66LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3E5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 62Right-handed 310
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
B
54 62Right-handed 310
Helix 4
4
B
80 84Right-handed 310
Helix 5
5
C
54 62Right-handed 310
Helix 6
6
C
80 84Right-handed 310
Helix 7
7
D
54 62Right-handed 310
Helix 8
8
D
80 84Right-handed 310
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There are 6 sheets in PDB entry 3E5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
153 164anti-parallel
Strand 3
A
169 180anti-parallel
Strand 4
A
88 96anti-parallel
Strand 5
A
101 111anti-parallel
Strand 6
A
114 124anti-parallel
Strand 7
A
9 19parallel
Strand 8
A
22 33anti-parallel
Strand 9
A
38 47anti-parallel
Strand 10
A
210 220anti-parallel
Strand 11
A
193 205anti-parallel
Strand 12
A
143 150anti-parallel
Strand 13
A
153 164anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
210 220parallel
Strand 3
B
38 47anti-parallel
Strand 4
B
22 33anti-parallel
Strand 5
B
9 19anti-parallel
Strand 6
B
114 124parallel
Strand 7
B
101 111anti-parallel
Strand 8
B
88 96anti-parallel
Strand 9
B
169 180anti-parallel
Strand 10
B
153 164anti-parallel
Strand 11
B
137 140anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
210 220parallel
Strand 3
B
193 205anti-parallel
Strand 4
B
143 150anti-parallel
Strand 5
B
153 164anti-parallel
Strand 6
B
137 140anti-parallel
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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
153 164anti-parallel
Strand 3
C
168 180anti-parallel
Strand 4
C
88 96anti-parallel
Strand 5
C
101 111anti-parallel
Strand 6
C
114 124anti-parallel
Strand 7
C
9 19parallel
Strand 8
C
22 33anti-parallel
Strand 9
C
38 47anti-parallel
Strand 10
C
210 220anti-parallel
Strand 11
C
193 205anti-parallel
Strand 12
C
143 150anti-parallel
Strand 13
C
153 164anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
210 220parallel
Strand 3
D
38 47anti-parallel
Strand 4
D
22 33anti-parallel
Strand 5
D
9 19anti-parallel
Strand 6
D
114 124parallel
Strand 7
D
101 111anti-parallel
Strand 8
D
88 96anti-parallel
Strand 9
D
169 180anti-parallel
Strand 10
D
153 164anti-parallel
Strand 11
D
137 140anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
210 220parallel
Strand 3
D
193 205anti-parallel
Strand 4
D
143 150anti-parallel
Strand 5
D
153 164anti-parallel
Strand 6
D
137 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il