Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5Y entry

There are 2 chains in PDB entry 3E5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 156
B
 MET 1ALA 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3E5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
40 47Right-handed alpha
Helix 3
3
A
50 56Right-handed alpha
Helix 4
4
A
62 71Right-handed alpha
Helix 5
5
A
73 75Right-handed 310
Helix 6
6
A
89 91Right-handed 310
Helix 7
7
A
109 114Right-handed alpha
Helix 8
8
A
115 116Right-handed 310
Helix 9
9
A
117 119Right-handed 310
Helix 10
10
A
134 150Right-handed alpha
Helix 11
11
B
11 26Right-handed alpha
Helix 12
12
B
62 71Right-handed alpha
Helix 13
13
B
73 75Right-handed 310
Helix 14
14
B
89 91Right-handed 310
Helix 15
15
B
109 114Right-handed alpha
Helix 16
16
B
115 116Right-handed 310
Helix 17
17
B
117 119Right-handed 310
Helix 18
18
B
134 150Right-handed alpha
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There are 2 sheets in PDB entry 3E5Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
28 32parallel
Strand 3
A
3 7parallel
Strand 4
A
98 102parallel
Strand 5
A
77 80parallel
Strand 6
A
121 123parallel
Strand 7
A
86 87parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
28 32parallel
Strand 3
B
3 7parallel
Strand 4
B
98 102parallel
Strand 5
B
77 80parallel
Strand 6
B
121 123parallel
Strand 7
B
86 87parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il