Analysis of interatomic Contacts of Structural Units in PDB entry:
3E60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E60 entry

There are 2 chains in PDB entry 3E60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 420
B
 MET 1GLU 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3E60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 28Right-handed alpha
Helix 2
2
A
63 67Right-handed 310
Helix 3
3
A
69 74Right-handed alpha
Helix 4
4
A
77 95Right-handed alpha
Helix 5
5
A
100 106Right-handed alpha
Helix 6
6
A
117 132Right-handed alpha
Helix 7
7
A
133 136Right-handed 310
Helix 8
8
A
147 158Right-handed alpha
Helix 9
9
A
168 170Right-handed 310
Helix 10
10
A
171 186Right-handed alpha
Helix 11
11
A
202 212Right-handed alpha
Helix 12
12
A
222 226Right-handed 310
Helix 13
13
A
251 257Right-handed alpha
Helix 14
14
A
284 299Right-handed alpha
Helix 15
15
A
301 305Right-handed 310
Helix 16
16
A
317 330Right-handed alpha
Helix 17
17
A
331 336Right-handed 310
Helix 18
18
A
341 346Right-handed alpha
Helix 19
19
A
348 350Right-handed 310
Helix 20
20
A
351 367Right-handed alpha
Helix 21
21
B
18 28Right-handed alpha
Helix 22
22
B
63 67Right-handed 310
Helix 23
23
B
69 74Right-handed alpha
Helix 24
24
B
77 95Right-handed alpha
Helix 25
25
B
100 106Right-handed alpha
Helix 26
26
B
117 131Right-handed alpha
Helix 27
27
B
132 136Right-handed 310
Helix 28
28
B
147 158Right-handed alpha
Helix 29
29
B
168 170Right-handed 310
Helix 30
30
B
171 186Right-handed alpha
Helix 31
31
B
202 212Right-handed alpha
Helix 32
32
B
222 226Right-handed 310
Helix 33
33
B
251 257Right-handed alpha
Helix 34
34
B
284 299Right-handed alpha
Helix 35
35
B
301 305Right-handed 310
Helix 36
36
B
317 330Right-handed alpha
Helix 37
37
B
331 336Right-handed 310
Helix 38
38
B
341 346Right-handed alpha
Helix 39
39
B
348 350Right-handed 310
Helix 40
40
B
351 367Right-handed alpha
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There are 6 sheets in PDB entry 3E60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
107 112parallel
Strand 3
A
191 198parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
4 12anti-parallel
Strand 6
A
263 272anti-parallel
Strand 7
A
409 416anti-parallel
Strand 8
A
398 405anti-parallel
Strand 9
A
307 309parallel
Strand 10
A
337 339parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
48 50anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
392 393anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
107 112parallel
Strand 3
B
191 198parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
4 12anti-parallel
Strand 6
B
263 272anti-parallel
Strand 7
B
409 416anti-parallel
Strand 8
B
398 405anti-parallel
Strand 9
B
307 309parallel
Strand 10
B
337 339parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
48 50anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
392 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il