Analysis of interatomic Contacts of Structural Units in PDB entry:
3E66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E66 entry

There are 2 chains in PDB entry 3E66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1833ASN 2087
B
 PRO 1833ASN 2087
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 3E66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1839 1845Right-handed 310
Helix 2
2
A
1895 1899Right-handed 310
Helix 3
3
A
1904 1924Right-handed alpha
Helix 4
4
A
1925 1929Right-handed 310
Helix 5
5
A
1937 1939Right-handed 310
Helix 6
6
A
1940 1948Right-handed alpha
Helix 7
7
A
1949 1951Right-handed 310
Helix 8
8
A
1964 1970Right-handed 310
Helix 9
9
A
1971 1981Right-handed alpha
Helix 10
10
A
1994 1998Right-handed 310
Helix 11
11
A
2000 2018Right-handed alpha
Helix 12
12
A
2018 2027Right-handed alpha
Helix 13
13
A
2044 2068Right-handed alpha
Helix 14
14
A
2070 2074Right-handed 310
Helix 15
15
A
2075 2085Right-handed alpha
Helix 16
16
B
1839 1845Right-handed 310
Helix 17
17
B
1895 1899Right-handed 310
Helix 18
18
B
1904 1924Right-handed alpha
Helix 19
19
B
1937 1939Right-handed 310
Helix 20
20
B
1940 1948Right-handed alpha
Helix 21
21
B
1964 1970Right-handed 310
Helix 22
22
B
1971 1980Right-handed alpha
Helix 23
23
B
1994 1998Right-handed 310
Helix 24
24
B
2000 2018Right-handed alpha
Helix 25
25
B
2018 2027Right-handed alpha
Helix 26
26
B
2044 2068Right-handed alpha
Helix 27
27
B
2075 2085Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3E66. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1955 1957first strand
Strand 2
A
1932 1935parallel
Strand 3
A
1849 1853parallel
Strand 4
A
1877 1882anti-parallel
Strand 5
A
1888 1894anti-parallel
Strand 6
A
1985 1990anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1859 1864first strand
Strand 2
A
1870 1875anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1955 1957first strand
Strand 2
B
1932 1935parallel
Strand 3
B
1849 1853parallel
Strand 4
B
1877 1882anti-parallel
Strand 5
B
1888 1894anti-parallel
Strand 6
B
1985 1990anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1859 1863first strand
Strand 2
B
1871 1875anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il