Analysis of interatomic Contacts of Structural Units in PDB entry:
3E6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E6B entry

There are 2 chains in PDB entry 3E6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17GLU 227
B
 PHE 19SER 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3E6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 32Right-handed 310
Helix 2
2
A
109 119Right-handed alpha
Helix 3
3
A
120 144Right-handed alpha
Helix 4
4
A
150 165Right-handed alpha
Helix 5
5
A
179 188Right-handed alpha
Helix 6
6
A
190 204Right-handed alpha
Helix 7
7
A
218 227Right-handed alpha
Helix 8
8
B
22 32Right-handed 310
Helix 9
9
B
109 119Right-handed alpha
Helix 10
10
B
120 144Right-handed alpha
Helix 11
11
B
149 165Right-handed alpha
Helix 12
12
B
179 188Right-handed alpha
Helix 13
13
B
190 204Right-handed alpha
Helix 14
14
B
218 226Right-handed alpha
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There are 6 sheets in PDB entry 3E6B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
102 108anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
83 84anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
72 79anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
207 209anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
102 108anti-parallel
Strand 3
B
52 58anti-parallel
Strand 4
B
83 84anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
93 98anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
72 78anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
172 175anti-parallel
Strand 3
B
213 216anti-parallel
Strand 4
B
207 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il