Analysis of interatomic Contacts of Structural Units in PDB entry:
3E6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E6J entry

There is 1 chain in PDB entry 3E6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20PRO 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3E6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 143Right-handed 310
Helix 2
2
A
184 186Right-handed 310
Helix 3
3
A
187 197Right-handed alpha
Helix 4
4
A
223 227Right-handed 310
Helix 5
5
A
228 232Right-handed 310
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There is 1 sheet ( A) in PDB entry 3E6J.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
53 55parallel
Strand 4
A
77 79parallel
Strand 5
A
101 103parallel
Strand 6
A
125 127parallel
Strand 7
A
148 150parallel
Strand 8
A
172 174parallel
Strand 9
A
201 204parallel
Strand 10
A
208 210anti-parallel
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