Analysis of interatomic Contacts of Structural Units in PDB entry:
3E6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E6M entry

There are 8 chains in PDB entry 3E6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8THR 156
B
 PRO 10TYR 158
C
 PRO 8THR 156
D
 PRO 10TYR 158
E
 PRO 8TYR 158
F
 PRO 10TYR 158
G
 PRO 8TYR 158
H
 PRO 10TYR 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 3E6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
23 47Right-handed alpha
Helix 3
3
A
49 63Right-handed alpha
Helix 4
4
A
67 74Right-handed alpha
Helix 5
5
A
77 91Right-handed alpha
Helix 6
6
A
111 134Right-handed alpha
Helix 7
7
A
137 155Right-handed alpha
Helix 8
8
B
16 21Right-handed alpha
Helix 9
9
B
23 43Right-handed alpha
Helix 10
10
B
44 47Right-handed 310
Helix 11
11
B
49 63Right-handed alpha
Helix 12
12
B
67 74Right-handed alpha
Helix 13
13
B
77 91Right-handed alpha
Helix 14
14
B
111 134Right-handed alpha
Helix 15
15
B
137 157Right-handed alpha
Helix 16
16
C
16 21Right-handed alpha
Helix 17
17
C
23 47Right-handed alpha
Helix 18
18
C
49 63Right-handed alpha
Helix 19
19
C
67 74Right-handed alpha
Helix 20
20
C
77 91Right-handed alpha
Helix 21
21
C
111 133Right-handed alpha
Helix 22
22
C
137 154Right-handed alpha
Helix 23
23
D
16 21Right-handed alpha
Helix 24
24
D
23 43Right-handed alpha
Helix 25
25
D
44 47Right-handed 310
Helix 26
26
D
49 63Right-handed alpha
Helix 27
27
D
67 74Right-handed alpha
Helix 28
28
D
77 91Right-handed alpha
Helix 29
29
D
111 133Right-handed alpha
Helix 30
30
D
137 157Right-handed alpha
Helix 31
31
E
16 21Right-handed alpha
Helix 32
32
E
23 44Right-handed alpha
Helix 33
33
E
49 63Right-handed alpha
Helix 34
34
E
66 74Right-handed alpha
Helix 35
35
E
77 92Right-handed alpha
Helix 36
36
E
111 120Right-handed alpha
Helix 37
37
E
121 134Right-handed alpha
Helix 38
38
E
137 156Right-handed alpha
Helix 39
39
F
16 21Right-handed alpha
Helix 40
40
F
23 43Right-handed alpha
Helix 41
41
F
49 60Right-handed alpha
Helix 42
42
F
66 74Right-handed alpha
Helix 43
43
F
77 91Right-handed alpha
Helix 44
44
F
111 121Right-handed alpha
Helix 45
45
F
121 133Right-handed alpha
Helix 46
46
F
137 154Right-handed alpha
Helix 47
47
G
16 22Right-handed alpha
Helix 48
48
G
23 45Right-handed alpha
Helix 49
49
G
49 63Right-handed alpha
Helix 50
50
G
66 74Right-handed alpha
Helix 51
51
G
77 91Right-handed alpha
Helix 52
52
G
111 120Right-handed alpha
Helix 53
53
G
121 134Right-handed alpha
Helix 54
54
G
137 155Right-handed alpha
Helix 55
55
H
16 21Right-handed alpha
Helix 56
56
H
23 43Right-handed alpha
Helix 57
57
H
49 63Right-handed alpha
Helix 58
58
H
66 74Right-handed alpha
Helix 59
59
H
77 91Right-handed alpha
Helix 60
60
H
111 121Right-handed alpha
Helix 61
61
H
121 133Right-handed alpha
Helix 62
62
H
137 154Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3E6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
107 110anti-parallel
Strand 3
B
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
94 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 66first strand
Strand 2
D
106 110anti-parallel
Strand 3
D
94 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 98first strand
Strand 2
E
106 110anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
64 65first strand
Strand 2
F
108 110anti-parallel
Strand 3
F
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
94 98first strand
Strand 2
G
106 110anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
64 65first strand
Strand 2
H
106 110anti-parallel
Strand 3
H
94 98anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il