Analysis of interatomic Contacts of Structural Units in PDB entry:
3E7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E7F entry

There are 2 chains in PDB entry 3E7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 261
B
 SER 2ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3E7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 32Right-handed alpha
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
59 64Right-handed alpha
Helix 5
5
A
86 95Right-handed alpha
Helix 6
6
A
96 99Right-handed 310
Helix 7
7
A
100 102Right-handed 310
Helix 8
8
A
119 138Right-handed alpha
Helix 9
9
A
174 178Right-handed 310
Helix 10
10
A
204 211Right-handed alpha
Helix 11
11
A
220 222Right-handed 310
Helix 12
12
A
223 232Right-handed alpha
Helix 13
13
A
239 247Right-handed 310
Helix 14
14
B
12 31Right-handed alpha
Helix 15
15
B
32 36Right-handed 310
Helix 16
16
B
45 59Right-handed alpha
Helix 17
17
B
59 64Right-handed alpha
Helix 18
18
B
86 95Right-handed alpha
Helix 19
19
B
96 99Right-handed 310
Helix 20
20
B
100 102Right-handed 310
Helix 21
21
B
119 138Right-handed alpha
Helix 22
22
B
174 178Right-handed 310
Helix 23
23
B
204 211Right-handed alpha
Helix 24
24
B
220 222Right-handed 310
Helix 25
25
B
223 232Right-handed alpha
Helix 26
26
B
239 247Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3E7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
250 256parallel
Strand 3
A
213 218parallel
Strand 4
A
155 158parallel
Strand 5
A
38 42parallel
Strand 6
A
69 73parallel
Strand 7
A
104 105parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
200 203anti-parallel
Strand 3
A
185 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
149 151anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
250 256parallel
Strand 3
B
213 218parallel
Strand 4
B
155 158parallel
Strand 5
B
38 42parallel
Strand 6
B
69 73parallel
Strand 7
B
104 105parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
200 203anti-parallel
Strand 3
B
185 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
149 151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il