Analysis of interatomic Contacts of Structural Units in PDB entry:
3E80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3E80 entry

There are 3 chains in PDB entry 3E80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	ARG 772
B	THR 27	ARG 772
C	THR 27	ARG 772

There are 86 helices in PDB entry 3E80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	54	58	Right-handed 310
Helix 2	2	A	60	67	Right-handed alpha
Helix 3	3	A	68	80	Right-handed alpha
Helix 4	4	A	85	89	Right-handed 310
Helix 5	5	A	94	100	Right-handed alpha
Helix 6	6	A	103	119	Right-handed alpha
Helix 7	7	A	120	138	Right-handed alpha
Helix 8	8	A	145	164	Right-handed alpha
Helix 9	9	A	165	168	Right-handed 310
Helix 10	10	A	169	185	Right-handed alpha
Helix 11	11	A	201	204	Right-handed 310
Helix 12	12	A	205	210	Right-handed alpha
Helix 13	13	A	210	219	Right-handed alpha
Helix 14	14	A	224	237	Right-handed alpha
Helix 15	15	A	237	246	Right-handed alpha
Helix 16	16	A	247	249	Right-handed 310
Helix 17	17	A	257	276	Right-handed alpha
Helix 18	18	A	282	288	Right-handed 310
Helix 19	19	A	289	295	Right-handed alpha
Helix 20	20	A	318	329	Right-handed alpha
Helix 21	21	A	331	340	Right-handed alpha
Helix 22	22	A	345	347	Right-handed 310
Helix 23	23	A	348	356	Right-handed alpha
Helix 24	24	A	364	368	Right-handed 310
Helix 25	25	A	438	444	Right-handed alpha
Helix 26	26	A	447	451	Right-handed 310
Helix 27	27	A	495	501	Right-handed alpha
Helix 28	28	A	531	534	Right-handed 310
Helix 29	29	A	612	614	Right-handed 310
Helix 30	30	B	54	59	Right-handed 310
Helix 31	31	B	60	67	Right-handed alpha
Helix 32	32	B	70	81	Right-handed alpha
Helix 33	33	B	85	89	Right-handed 310
Helix 34	34	B	94	100	Right-handed alpha
Helix 35	35	B	103	119	Right-handed alpha
Helix 36	36	B	120	138	Right-handed alpha
Helix 37	37	B	145	164	Right-handed alpha
Helix 38	38	B	165	168	Right-handed 310
Helix 39	39	B	169	185	Right-handed alpha
Helix 40	40	B	201	204	Right-handed 310
Helix 41	41	B	205	210	Right-handed alpha
Helix 42	42	B	210	219	Right-handed alpha
Helix 43	43	B	224	237	Right-handed alpha
Helix 44	44	B	237	246	Right-handed alpha
Helix 45	45	B	247	249	Right-handed 310
Helix 46	46	B	253	276	Right-handed alpha
Helix 47	47	B	282	288	Right-handed 310
Helix 48	48	B	289	295	Right-handed alpha
Helix 49	49	B	318	330	Right-handed alpha
Helix 50	50	B	331	341	Right-handed alpha
Helix 51	51	B	345	347	Right-handed 310
Helix 52	52	B	348	356	Right-handed alpha
Helix 53	53	B	364	368	Right-handed 310
Helix 54	54	B	438	444	Right-handed alpha
Helix 55	55	B	447	451	Right-handed 310
Helix 56	56	B	495	502	Right-handed alpha
Helix 57	57	B	531	534	Right-handed 310
Helix 58	58	B	612	614	Right-handed 310
Helix 59	59	C	54	59	Right-handed 310
Helix 60	60	C	60	66	Right-handed alpha
Helix 61	61	C	67	80	Right-handed alpha
Helix 62	62	C	94	100	Right-handed alpha
Helix 63	63	C	103	119	Right-handed alpha
Helix 64	64	C	120	138	Right-handed alpha
Helix 65	65	C	146	164	Right-handed alpha
Helix 66	66	C	165	168	Right-handed 310
Helix 67	67	C	169	185	Right-handed alpha
Helix 68	68	C	201	204	Right-handed 310
Helix 69	69	C	205	210	Right-handed alpha
Helix 70	70	C	210	220	Right-handed alpha
Helix 71	71	C	224	237	Right-handed alpha
Helix 72	72	C	237	246	Right-handed alpha
Helix 73	73	C	247	249	Right-handed 310
Helix 74	74	C	253	275	Right-handed alpha
Helix 75	75	C	282	288	Right-handed 310
Helix 76	76	C	289	295	Right-handed alpha
Helix 77	77	C	318	329	Right-handed alpha
Helix 78	78	C	331	340	Right-handed alpha
Helix 79	79	C	345	347	Right-handed 310
Helix 80	80	C	348	356	Right-handed alpha
Helix 81	81	C	364	368	Right-handed 310
Helix 82	82	C	438	444	Right-handed alpha
Helix 83	83	C	447	451	Right-handed 310
Helix 84	84	C	495	502	Right-handed alpha
Helix 85	85	C	531	534	Right-handed 310
Helix 86	86	C	612	614	Right-handed 310

There are 22 sheets in PDB entry 3E80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	36	first strand
Strand 2	A	39	42	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	392	397	anti-parallel
Strand 4	A	414	418	anti-parallel
Strand 5	A	421	423	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	573	580	anti-parallel
Strand 3	A	652	658	anti-parallel
Strand 4	A	616	622	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	515	first strand
Strand 2	A	523	529	anti-parallel
Strand 3	A	538	549	anti-parallel
Strand 4	A	557	567	anti-parallel
Strand 5	A	664	675	anti-parallel
Strand 6	A	602	610	anti-parallel
Strand 7	A	590	594	anti-parallel
Strand 8	A	585	587	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	630	first strand
Strand 2	A	633	634	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	688	first strand
Strand 2	A	692	697	anti-parallel
Strand 3	A	700	705	anti-parallel
Strand 4	A	725	729	parallel
Strand 5	A	759	763	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	719	first strand
Strand 2	A	766	771	anti-parallel
Strand 3	A	735	741	anti-parallel
Strand 4	A	744	752	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	39	42	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	380	384	anti-parallel
Strand 3	B	393	397	anti-parallel
Strand 4	B	414	417	anti-parallel
Strand 5	B	421	423	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	573	580	anti-parallel
Strand 3	B	652	658	anti-parallel
Strand 4	B	616	622	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	B	476	477	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	515	first strand
Strand 2	B	523	529	anti-parallel
Strand 3	B	538	549	anti-parallel
Strand 4	B	557	567	anti-parallel
Strand 5	B	664	675	anti-parallel
Strand 6	B	602	610	anti-parallel
Strand 7	B	590	594	anti-parallel
Strand 8	B	585	587	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	630	first strand
Strand 2	B	633	634	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	692	697	anti-parallel
Strand 3	B	700	705	anti-parallel
Strand 4	B	725	729	parallel
Strand 5	B	759	763	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	719	first strand
Strand 2	B	766	771	anti-parallel
Strand 3	B	735	741	anti-parallel
Strand 4	B	744	752	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	39	42	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	392	397	anti-parallel
Strand 4	C	414	418	anti-parallel
Strand 5	C	421	423	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	456	first strand
Strand 2	C	574	580	anti-parallel
Strand 3	C	652	658	anti-parallel
Strand 4	C	616	622	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	515	first strand
Strand 2	C	523	529	anti-parallel
Strand 3	C	538	548	anti-parallel
Strand 4	C	557	567	anti-parallel
Strand 5	C	664	675	anti-parallel
Strand 6	C	602	610	anti-parallel
Strand 7	C	590	594	anti-parallel
Strand 8	C	585	587	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	633	634	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	685	688	first strand
Strand 2	C	692	697	anti-parallel
Strand 3	C	700	705	anti-parallel
Strand 4	C	725	729	parallel
Strand 5	C	759	763	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	719	first strand
Strand 2	C	766	771	anti-parallel
Strand 3	C	735	741	anti-parallel
Strand 4	C	744	752	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3E80

Analysis of interatomic Contacts of Structural Units in PDB entry:
3E80