Analysis of interatomic Contacts of Structural Units in PDB entry:
3E84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E84 entry

There are 4 chains in PDB entry 3E84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 164
B
 MET 1GLN 164
C
 MET 1GLN 164
D
 MET 1GLN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3E84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 46Right-handed alpha
Helix 2
2
A
58 68Right-handed alpha
Helix 3
3
A
79 92Right-handed alpha
Helix 4
4
A
94 96Right-handed 310
Helix 5
5
A
104 106Right-handed 310
Helix 6
6
A
107 112Right-handed alpha
Helix 7
7
A
124 129Right-handed alpha
Helix 8
8
A
142 152Right-handed alpha
Helix 9
9
A
155 163Right-handed alpha
Helix 10
10
B
36 46Right-handed alpha
Helix 11
11
B
58 68Right-handed alpha
Helix 12
12
B
79 92Right-handed alpha
Helix 13
13
B
94 96Right-handed 310
Helix 14
14
B
104 106Right-handed 310
Helix 15
15
B
107 112Right-handed alpha
Helix 16
16
B
124 129Right-handed alpha
Helix 17
17
B
142 152Right-handed alpha
Helix 18
18
B
155 163Right-handed alpha
Helix 19
19
C
36 46Right-handed alpha
Helix 20
20
C
58 68Right-handed alpha
Helix 21
21
C
79 92Right-handed alpha
Helix 22
22
C
94 96Right-handed 310
Helix 23
23
C
104 106Right-handed 310
Helix 24
24
C
107 112Right-handed alpha
Helix 25
25
C
124 129Right-handed alpha
Helix 26
26
C
142 152Right-handed alpha
Helix 27
27
C
155 164Right-handed alpha
Helix 28
28
D
36 46Right-handed alpha
Helix 29
29
D
58 68Right-handed alpha
Helix 30
30
D
79 91Right-handed alpha
Helix 31
31
D
94 96Right-handed 310
Helix 32
32
D
104 106Right-handed 310
Helix 33
33
D
107 112Right-handed alpha
Helix 34
34
D
124 129Right-handed alpha
Helix 35
35
D
142 152Right-handed alpha
Helix 36
36
D
155 163Right-handed alpha
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There are 5 sheets in PDB entry 3E84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
50 53parallel
Strand 3
A
6 9parallel
Strand 4
A
98 101parallel
Strand 5
A
116 118parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
28 33anti-parallel
Strand 3
C
19 22anti-parallel
Strand 4
C
28 33anti-parallel
Strand 5
D
19 22anti-parallel
Strand 6
D
28 33anti-parallel
Strand 7
B
19 22anti-parallel
Strand 8
B
28 33anti-parallel
Strand 9
A
19 23anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
50 53parallel
Strand 3
B
6 9parallel
Strand 4
B
98 101parallel
Strand 5
B
116 118parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
50 53parallel
Strand 3
C
6 9parallel
Strand 4
C
98 101parallel
Strand 5
C
116 118parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 74first strand
Strand 2
D
50 53parallel
Strand 3
D
6 9parallel
Strand 4
D
98 101parallel
Strand 5
D
116 118parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il