Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8C entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 29 chains in PDB entry 3E8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7GLY 9
A
 GLU 11TRP 196
A
 LEU 198VAL 337
A
 ILE 339PHE 350
B
 ALA 4GLY 9
B
 GLU 11TRP 196
B
 LEU 198VAL 337
B
 ILE 339PHE 350
C
 LYS 7GLY 9
C
 GLU 11TRP 196
C
 LEU 198VAL 337
C
 ILE 339PHE 350
D
 ALA 4GLY 9
D
 GLU 11TRP 196
D
 LEU 198VAL 337
D
 ILE 339PHE 350
E
 GLU 13TRP 196
E
 LEU 198VAL 337
E
 ILE 339PHE 350
F
 LYS 7GLY 9
F
 GLU 11TRP 196
F
 LEU 198VAL 337
F
 ILE 339PHE 350
G
 THR 5ILE 22
H
 THR 5ASP 24
I
 THR 5ASP 24
J
 THR 5HIS 23
K
 THR 5ASP 24
L
 THR 6ASP 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 3E8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 32Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
76 82Right-handed alpha
Helix 4
4
A
84 98Right-handed alpha
Helix 5
5
A
127 136Right-handed alpha
Helix 6
6
A
139 160Right-handed alpha
Helix 7
7
A
168 170Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
206 211Right-handed alpha
Helix 10
10
A
217 234Right-handed alpha
Helix 11
11
A
242 253Right-handed alpha
Helix 12
12
A
262 273Right-handed alpha
Helix 13
13
A
276 280Right-handed 310
Helix 14
14
A
288 293Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
301 307Right-handed alpha
Helix 17
17
B
12 32Right-handed alpha
Helix 18
18
B
39 41Right-handed 310
Helix 19
19
B
76 82Right-handed alpha
Helix 20
20
B
84 96Right-handed alpha
Helix 21
21
B
127 136Right-handed alpha
Helix 22
22
B
139 160Right-handed alpha
Helix 23
23
B
168 170Right-handed 310
Helix 24
24
B
201 205Right-handed 310
Helix 25
25
B
206 211Right-handed alpha
Helix 26
26
B
217 234Right-handed alpha
Helix 27
27
B
242 253Right-handed alpha
Helix 28
28
B
262 273Right-handed alpha
Helix 29
29
B
276 280Right-handed 310
Helix 30
30
B
288 293Right-handed alpha
Helix 31
31
B
294 298Right-handed 310
Helix 32
32
B
301 307Right-handed alpha
Helix 33
33
C
10 32Right-handed alpha
Helix 34
34
C
39 41Right-handed 310
Helix 35
35
C
76 82Right-handed alpha
Helix 36
36
C
84 96Right-handed alpha
Helix 37
37
C
127 136Right-handed alpha
Helix 38
38
C
139 160Right-handed alpha
Helix 39
39
C
168 170Right-handed 310
Helix 40
40
C
201 205Right-handed 310
Helix 41
41
C
206 211Right-handed alpha
Helix 42
42
C
217 234Right-handed alpha
Helix 43
43
C
242 253Right-handed alpha
Helix 44
44
C
262 273Right-handed alpha
Helix 45
45
C
276 280Right-handed 310
Helix 46
46
C
288 293Right-handed alpha
Helix 47
47
C
294 298Right-handed 310
Helix 48
48
C
301 307Right-handed alpha
Helix 49
49
D
10 32Right-handed alpha
Helix 50
50
D
39 41Right-handed 310
Helix 51
51
D
76 82Right-handed alpha
Helix 52
52
D
84 96Right-handed alpha
Helix 53
53
D
127 136Right-handed alpha
Helix 54
54
D
139 160Right-handed alpha
Helix 55
55
D
168 170Right-handed 310
Helix 56
56
D
201 205Right-handed 310
Helix 57
57
D
206 211Right-handed alpha
Helix 58
58
D
217 234Right-handed alpha
Helix 59
59
D
242 253Right-handed alpha
Helix 60
60
D
262 273Right-handed alpha
Helix 61
61
D
276 280Right-handed 310
Helix 62
62
D
288 293Right-handed alpha
Helix 63
63
D
294 298Right-handed 310
Helix 64
64
D
301 307Right-handed alpha
Helix 65
65
E
16 32Right-handed alpha
Helix 66
66
E
39 41Right-handed 310
Helix 67
67
E
76 82Right-handed alpha
Helix 68
68
E
84 96Right-handed alpha
Helix 69
69
E
127 136Right-handed alpha
Helix 70
70
E
139 160Right-handed alpha
Helix 71
71
E
168 170Right-handed 310
Helix 72
72
E
201 205Right-handed 310
Helix 73
73
E
206 211Right-handed alpha
Helix 74
74
E
217 234Right-handed alpha
Helix 75
75
E
242 253Right-handed alpha
Helix 76
76
E
262 273Right-handed alpha
Helix 77
77
E
276 280Right-handed 310
Helix 78
78
E
288 293Right-handed alpha
Helix 79
79
E
294 298Right-handed 310
Helix 80
80
E
301 307Right-handed alpha
Helix 81
81
F
9 32Right-handed alpha
Helix 82
82
F
39 41Right-handed 310
Helix 83
83
F
76 82Right-handed alpha
Helix 84
84
F
84 96Right-handed alpha
Helix 85
85
F
127 136Right-handed alpha
Helix 86
86
F
139 160Right-handed alpha
Helix 87
87
F
168 170Right-handed 310
Helix 88
88
F
201 205Right-handed 310
Helix 89
89
F
206 211Right-handed alpha
Helix 90
90
F
217 234Right-handed alpha
Helix 91
91
F
242 253Right-handed alpha
Helix 92
92
F
262 273Right-handed alpha
Helix 93
93
F
276 280Right-handed 310
Helix 94
94
F
288 293Right-handed alpha
Helix 95
95
F
294 298Right-handed 310
Helix 96
96
F
301 307Right-handed alpha
Helix 97
97
G
5 13Right-handed alpha
Helix 98
98
H
5 13Right-handed alpha
Helix 99
99
I
6 13Right-handed alpha
Helix 100
100
J
5 13Right-handed alpha
Helix 101
101
K
5 13Right-handed alpha
Helix 102
102
L
6 6Right-handed alpha
Helix 103
103
L
7 13Right-handed alpha
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There are 18 sheets in PDB entry 3E8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 52first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
115 120anti-parallel
Strand 5
A
106 111anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 52first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
115 120anti-parallel
Strand 5
B
106 111anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
189 190anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
180 182anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 52first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
115 120anti-parallel
Strand 5
C
106 111anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
189 190anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
180 182anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 52first strand
Strand 2
D
55 62anti-parallel
Strand 3
D
68 75anti-parallel
Strand 4
D
115 120anti-parallel
Strand 5
D
106 111anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 163first strand
Strand 2
D
189 190anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
180 182anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 52first strand
Strand 2
E
55 62anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
115 120anti-parallel
Strand 5
E
106 111anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 163first strand
Strand 2
E
189 190anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 174first strand
Strand 2
E
180 182anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 52first strand
Strand 2
F
55 62anti-parallel
Strand 3
F
68 75anti-parallel
Strand 4
F
115 120anti-parallel
Strand 5
F
106 111anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
162 163first strand
Strand 2
F
189 190anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
172 174first strand
Strand 2
F
180 182anti-parallel
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