Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8L entry

There are 3 chains in PDB entry 3E8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 2ASP 177
A
 ILE 16ASN 238
B
 ILE 16ASN 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3E8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
114 118Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
159 167Right-handed alpha
Helix 4
4
A
227 237Right-handed alpha
Helix 5
5
B
53 57Right-handed 310
Helix 6
6
B
159 167Right-handed alpha
Helix 7
7
B
227 238Right-handed alpha
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There are 10 sheets in PDB entry 3E8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
171 175anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 41first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
109 111anti-parallel
Strand 4
C
93 95anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
76 81anti-parallel
Strand 3
C
122 127anti-parallel
Strand 4
C
134 139anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
B
201 210anti-parallel
Strand 3
B
195 198anti-parallel
Strand 4
B
130 135anti-parallel
Strand 5
B
151 156anti-parallel
Strand 6
B
20 21anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
B
201 210anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
175 178anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
105 106anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 156first strand
Strand 2
C
159 164anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
151 156anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
195 198anti-parallel
Strand 5
A
201 208anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
175 178anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
101 105anti-parallel
Strand 5
A
78 87anti-parallel
Strand 6
A
62 65anti-parallel
Strand 7
A
30 34anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
49 52anti-parallel
Strand 4
B
101 105anti-parallel
Strand 5
B
78 87anti-parallel
Strand 6
B
62 65anti-parallel
Strand 7
B
30 34anti-parallel
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