Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8P entry

There are 4 chains in PDB entry 3E8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLY 164
B
 SER 12GLY 164
C
 SER 12GLY 164
D
 SER 12GLY 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3E8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 30Right-handed alpha
Helix 2
2
A
31 38Right-handed alpha
Helix 3
3
A
56 58Right-handed 310
Helix 4
4
A
69 91Right-handed alpha
Helix 5
5
A
97 108Right-handed alpha
Helix 6
6
B
13 30Right-handed alpha
Helix 7
7
B
31 38Right-handed alpha
Helix 8
8
B
56 58Right-handed 310
Helix 9
9
B
69 93Right-handed alpha
Helix 10
10
B
97 108Right-handed alpha
Helix 11
11
C
13 30Right-handed alpha
Helix 12
12
C
31 38Right-handed alpha
Helix 13
13
C
56 58Right-handed 310
Helix 14
14
C
63 66Right-handed 310
Helix 15
15
C
69 91Right-handed alpha
Helix 16
16
C
97 108Right-handed alpha
Helix 17
17
D
13 31Right-handed alpha
Helix 18
18
D
31 38Right-handed alpha
Helix 19
19
D
56 60Right-handed 310
Helix 20
20
D
69 92Right-handed alpha
Helix 21
21
D
97 108Right-handed alpha
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There are 5 sheets in PDB entry 3E8P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
125 134anti-parallel
Strand 4
A
139 148anti-parallel
Strand 5
A
153 162anti-parallel
Strand 6
A
109 117anti-parallel
Strand 7
C
109 117anti-parallel
Strand 8
C
153 162anti-parallel
Strand 9
C
139 147anti-parallel
Strand 10
C
125 134anti-parallel
Strand 11
C
48 54anti-parallel
Strand 12
C
39 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
67 68anti-parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
125 134anti-parallel
Strand 4
B
139 148anti-parallel
Strand 5
B
153 162anti-parallel
Strand 6
B
109 117anti-parallel
Strand 7
D
109 117anti-parallel
Strand 8
D
153 162anti-parallel
Strand 9
D
139 148anti-parallel
Strand 10
D
125 134anti-parallel
Strand 11
D
50 54anti-parallel
Strand 12
D
39 43anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
67 68anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
67 68anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il