Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8S entry

There is 1 chain in PDB entry 3E8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7HIS 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3E8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 29Right-handed alpha
Helix 2
2
A
32 38Right-handed alpha
Helix 3
3
A
38 50Right-handed alpha
Helix 4
4
A
63 71Right-handed alpha
Helix 5
5
A
82 92Right-handed alpha
Helix 6
6
A
101 107Right-handed alpha
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
187 198Right-handed alpha
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There are 2 sheets in PDB entry 3E8S. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
75 80parallel
Strand 3
A
54 58parallel
Strand 4
A
116 122parallel
Strand 5
A
141 151parallel
Strand 6
A
219 225anti-parallel
Strand 7
A
200 206anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
181 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il