Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8X entry

There is 1 chain in PDB entry 3E8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3E8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
36 43Right-handed alpha
Helix 4
4
A
57 62Right-handed 310
Helix 5
5
A
78 85Right-handed alpha
Helix 6
6
A
87 101Right-handed alpha
Helix 7
7
A
115 119Right-handed 310
Helix 8
8
A
120 122Right-handed 310
Helix 9
9
A
123 140Right-handed alpha
Helix 10
10
A
176 187Right-handed alpha
Helix 11
11
A
189 193Right-handed 310
Helix 12
12
A
206 212Right-handed alpha
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There are 2 sheets in PDB entry 3E8X. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
66 69parallel
Strand 5
A
104 108parallel
Strand 6
A
143 149parallel
Strand 7
A
195 205parallel
Strand 8
A
160 164anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
174 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il