Analysis of interatomic Contacts of Structural Units in PDB entry:
3E98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E98 entry

There are 2 chains in PDB entry 3E98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 48PHE 225
B
 ASP 46PHE 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3E98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 96Right-handed alpha
Helix 2
2
A
98 113Right-handed alpha
Helix 3
3
A
136 149Right-handed alpha
Helix 4
4
A
159 167Right-handed alpha
Helix 5
5
A
171 175Right-handed 310
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
208 222Right-handed alpha
Helix 8
8
A
223 225Right-handed 310
Helix 9
9
B
46 95Right-handed alpha
Helix 10
10
B
98 113Right-handed alpha
Helix 11
11
B
136 145Right-handed alpha
Helix 12
12
B
159 173Right-handed alpha
Helix 13
13
B
208 222Right-handed alpha
Helix 14
14
B
223 225Right-handed 310
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There are 2 sheets in PDB entry 3E98. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
118 124parallel
Strand 3
A
188 196anti-parallel
Strand 4
A
177 184anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
118 124parallel
Strand 3
B
188 196anti-parallel
Strand 4
B
177 184anti-parallel
Strand 5
B
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il