Analysis of interatomic Contacts of Structural Units in PDB entry:
3E9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3E9H entry

There are 4 chains in PDB entry 3E9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	HIS 492
B	GLU 4	HIS 492
C	GLU 4	HIS 492
D	GLU 4	HIS 492

There are 73 helices in PDB entry 3E9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	22	Right-handed alpha
Helix 2	2	A	36	45	Right-handed alpha
Helix 3	3	A	48	56	Right-handed alpha
Helix 4	4	A	92	106	Right-handed alpha
Helix 5	5	A	152	159	Right-handed alpha
Helix 6	6	A	159	167	Right-handed alpha
Helix 7	7	A	167	191	Right-handed alpha
Helix 8	8	A	230	240	Right-handed alpha
Helix 9	9	A	276	297	Right-handed alpha
Helix 10	10	A	319	327	Right-handed alpha
Helix 11	11	A	336	347	Right-handed alpha
Helix 12	12	A	356	369	Right-handed alpha
Helix 13	13	A	370	373	Right-handed 310
Helix 14	14	A	383	387	Right-handed 310
Helix 15	15	A	421	438	Right-handed alpha
Helix 16	16	A	447	456	Right-handed alpha
Helix 17	17	A	468	476	Right-handed alpha
Helix 18	18	A	480	484	Right-handed 310
Helix 19	19	B	6	21	Right-handed alpha
Helix 20	20	B	36	45	Right-handed alpha
Helix 21	21	B	48	56	Right-handed alpha
Helix 22	22	B	92	96	Right-handed alpha
Helix 23	23	B	96	106	Right-handed alpha
Helix 24	24	B	154	159	Right-handed alpha
Helix 25	25	B	159	167	Right-handed alpha
Helix 26	26	B	167	191	Right-handed alpha
Helix 27	27	B	230	240	Right-handed alpha
Helix 28	28	B	276	297	Right-handed alpha
Helix 29	29	B	319	328	Right-handed alpha
Helix 30	30	B	336	348	Right-handed alpha
Helix 31	31	B	356	369	Right-handed alpha
Helix 32	32	B	370	373	Right-handed 310
Helix 33	33	B	383	387	Right-handed 310
Helix 34	34	B	421	438	Right-handed alpha
Helix 35	35	B	447	456	Right-handed alpha
Helix 36	36	B	468	475	Right-handed alpha
Helix 37	37	B	480	484	Right-handed 310
Helix 38	38	C	7	22	Right-handed alpha
Helix 39	39	C	36	45	Right-handed alpha
Helix 40	40	C	48	56	Right-handed alpha
Helix 41	41	C	92	106	Right-handed alpha
Helix 42	42	C	152	159	Right-handed alpha
Helix 43	43	C	159	167	Right-handed alpha
Helix 44	44	C	167	191	Right-handed alpha
Helix 45	45	C	230	240	Right-handed alpha
Helix 46	46	C	276	297	Right-handed alpha
Helix 47	47	C	319	327	Right-handed alpha
Helix 48	48	C	336	347	Right-handed alpha
Helix 49	49	C	356	369	Right-handed alpha
Helix 50	50	C	370	373	Right-handed 310
Helix 51	51	C	383	387	Right-handed 310
Helix 52	52	C	421	438	Right-handed alpha
Helix 53	53	C	447	456	Right-handed alpha
Helix 54	54	C	468	476	Right-handed alpha
Helix 55	55	C	480	484	Right-handed 310
Helix 56	56	D	6	21	Right-handed alpha
Helix 57	57	D	36	45	Right-handed alpha
Helix 58	58	D	48	56	Right-handed alpha
Helix 59	59	D	92	106	Right-handed alpha
Helix 60	60	D	154	159	Right-handed alpha
Helix 61	61	D	159	167	Right-handed alpha
Helix 62	62	D	167	191	Right-handed alpha
Helix 63	63	D	230	240	Right-handed alpha
Helix 64	64	D	276	297	Right-handed alpha
Helix 65	65	D	319	328	Right-handed alpha
Helix 66	66	D	336	348	Right-handed alpha
Helix 67	67	D	356	369	Right-handed alpha
Helix 68	68	D	370	373	Right-handed 310
Helix 69	69	D	383	387	Right-handed 310
Helix 70	70	D	421	438	Right-handed alpha
Helix 71	71	D	447	456	Right-handed alpha
Helix 72	72	D	468	476	Right-handed alpha
Helix 73	73	D	480	484	Right-handed 310

There are 16 sheets in PDB entry 3E9H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	69	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	84	91	anti-parallel
Strand 4	A	126	137	parallel
Strand 5	A	111	120	anti-parallel
Strand 6	A	58	69	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	244	252	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	461	467	anti-parallel
Strand 5	A	410	417	anti-parallel
Strand 6	A	402	407	anti-parallel
Strand 7	A	377	380	anti-parallel
Strand 8	A	315	318	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	214	217	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	306	309	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	69	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	126	137	parallel
Strand 5	B	111	120	anti-parallel
Strand 6	B	58	69	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	244	252	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	461	467	anti-parallel
Strand 5	B	410	417	anti-parallel
Strand 6	B	402	407	anti-parallel
Strand 7	B	377	380	anti-parallel
Strand 8	B	315	318	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	222	226	anti-parallel
Strand 3	B	214	217	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	306	309	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	69	first strand
Strand 2	C	74	81	anti-parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	126	137	parallel
Strand 5	C	111	120	anti-parallel
Strand 6	C	58	69	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	244	252	parallel
Strand 3	C	264	273	anti-parallel
Strand 4	C	461	467	anti-parallel
Strand 5	C	410	417	anti-parallel
Strand 6	C	402	407	anti-parallel
Strand 7	C	377	380	anti-parallel
Strand 8	C	315	318	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	222	226	anti-parallel
Strand 3	C	214	217	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	306	309	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	69	first strand
Strand 2	D	74	81	anti-parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	126	137	parallel
Strand 5	D	111	120	anti-parallel
Strand 6	D	58	69	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	244	252	parallel
Strand 3	D	264	273	anti-parallel
Strand 4	D	461	467	anti-parallel
Strand 5	D	410	417	anti-parallel
Strand 6	D	402	407	anti-parallel
Strand 7	D	377	380	anti-parallel
Strand 8	D	315	318	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	222	226	anti-parallel
Strand 3	D	214	217	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	303	first strand
Strand 2	D	306	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3E9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
3E9H