Analysis of interatomic Contacts of Structural Units in PDB entry:
3EAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EAF entry

There is 1 chain in PDB entry 3EAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43GLY 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3EAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 80Right-handed alpha
Helix 2
2
A
101 115Right-handed alpha
Helix 3
3
A
125 140Right-handed alpha
Helix 4
4
A
149 153Right-handed 310
Helix 5
5
A
164 181Right-handed alpha
Helix 6
6
A
193 198Right-handed alpha
Helix 7
7
A
199 207Right-handed alpha
Helix 8
8
A
208 210Right-handed 310
Helix 9
9
A
225 238Right-handed alpha
Helix 10
10
A
249 264Right-handed alpha
Helix 11
11
A
273 276Right-handed 310
Helix 12
12
A
279 285Right-handed alpha
Helix 13
13
A
286 289Right-handed 310
Helix 14
14
A
300 304Right-handed 310
Helix 15
15
A
307 320Right-handed alpha
Helix 16
16
A
323 327Right-handed 310
Helix 17
17
A
328 346Right-handed alpha
Helix 18
18
A
349 357Right-handed alpha
Helix 19
19
A
357 368Right-handed alpha
Helix 20
20
A
417 424Right-handed alpha
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There are 2 sheets in PDB entry 3EAF. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
88 97anti-parallel
Strand 3
A
44 52parallel
Strand 4
A
120 123parallel
Strand 5
A
142 145parallel
Strand 6
A
158 159parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 219first strand
Strand 2
A
183 189parallel
Strand 3
A
243 246parallel
Strand 4
A
268 271parallel
Strand 5
A
292 296parallel
Strand 6
A
393 398anti-parallel
Strand 7
A
404 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il